Click here to switch to the map view.

The map label for this gene is hycD

Identifier: 45659237

GI number: 45659237

Start: 4196323

End: 4197210

Strand: Direct

Name: hycD

Synonym: LIC13420

Alternate gene names: 45659237

Gene position: 4196323-4197210 (Clockwise)

Preceding gene: 45659236

Following gene: 45659238

Centisome position: 98.11

GC content: 39.53

Gene sequence:

>888_bases
ATGGAAATTATTCTTAAATACCTTGACCCGATAATTCGGGTTTTGTCTTTTATCGTTCTTCCGTTTTTATGCGGAGGACT
GGTTCAAAAAATAAGATCTTATTCTCAAGGAAGAGTAGGCGCTCCCGTTTTTCAAATTTTCTACGACACTTGGAGAATGA
TCCGTAAAAAACCTGTGGATGGACCGTTCTCAGGATTTTTTACGGAGGCTTCCCCTCTCATAGCCTGTTTATCTGGATTT
GCTGTTTGGAGTTTGACTAGTTTCGAATGGGGATCTTTTCTTTTGATTCCATTTTTAATCGGAATTATGAGATTTGCGTT
ACTCGCTTATTCTGTAGAAAACGGTACATCTTTCGCAGGAATGGGTGCAGCGAGAGAAGTTATACTCTATGTGTTCTGTG
AACCAATTATGATTTTGGTTCTAGTAGTGTTTGAATCACATCTGGTATTTAATGCGAACTTTGCAAGTCTCGCGTTCGGC
GGTTTATTTCTTTTAGGAACTTCTTTGATAATTTTAGCGGAACTCGCCAAACCGCCGTTTGACGATCCTAGAACTCATTT
GGAACTTACTATGGTTCACGAGGCTATGTTGCTCGAAGCGTCCGGAAGTAGAAGGGCCCTTTTTGAATTGGCACAACAAT
TTAAAACATGCGCGTTATTTCTATTTGTAGCTAAGATGGGAGTTTATCACGGAGAATTCTTTTTAAATCGTTCCGTACCC
ATTTTTTGGCTCGATATAGTTGCGGTTTTAGGAGCGGTTTTTGTTTCAATTTGTGTGGGTTACATAGAAGCAAATAGTAC
TCGAAGAAAGTGGCTCTGGGTTCCAGAGTTACTCGGTTTAAACTTCATCTTCATGCTCTTTTTGGGCATTCTTCTTAAAT
TAGGTTGA

Upstream 100 bases:

>100_bases
CAAACGAAGAATCGATTTCGATCAATCTCGCTTTTTCTTCCGTGACAGTGGTAATCCTTCTATTCGTAATTATCGGCCTG
AAGTTGACCGAGGGAGATTT

Downstream 100 bases:

>100_bases
TCCTAAGGAAAAAGTTATATGGGAACAGAATTCAGTTATCTAATTTTACTTTTAATTGGAGTTGTGATTCTTCTTGAAAA
TCGTTTGAAAAGACTCGTTC

Product: hydrogenase subunit

Products: H2; oxidized ferredoxin [C]

Alternate protein names: Ni-Fe Hydrogenase Membrane Subunit HycD/HyfD; NADH Dehydrogenase; Formate Hydrogenase Subunit C; Hydrogenase Protein; Hydrogenase HycD Subunit Family Protein; Hydrogenase-4 Component C; Hydrogenase-4 Subunit D

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MEIILKYLDPIIRVLSFIVLPFLCGGLVQKIRSYSQGRVGAPVFQIFYDTWRMIRKKPVDGPFSGFFTEASPLIACLSGF
AVWSLTSFEWGSFLLIPFLIGIMRFALLAYSVENGTSFAGMGAAREVILYVFCEPIMILVLVVFESHLVFNANFASLAFG
GLFLLGTSLIILAELAKPPFDDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTCALFLFVAKMGVYHGEFFLNRSVP
IFWLDIVAVLGAVFVSICVGYIEANSTRRKWLWVPELLGLNFIFMLFLGILLKLG

Sequences:

>Translated_295_residues
MEIILKYLDPIIRVLSFIVLPFLCGGLVQKIRSYSQGRVGAPVFQIFYDTWRMIRKKPVDGPFSGFFTEASPLIACLSGF
AVWSLTSFEWGSFLLIPFLIGIMRFALLAYSVENGTSFAGMGAAREVILYVFCEPIMILVLVVFESHLVFNANFASLAFG
GLFLLGTSLIILAELAKPPFDDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTCALFLFVAKMGVYHGEFFLNRSVP
IFWLDIVAVLGAVFVSICVGYIEANSTRRKWLWVPELLGLNFIFMLFLGILLKLG
>Mature_295_residues
MEIILKYLDPIIRVLSFIVLPFLCGGLVQKIRSYSQGRVGAPVFQIFYDTWRMIRKKPVDGPFSGFFTEASPLIACLSGF
AVWSLTSFEWGSFLLIPFLIGIMRFALLAYSVENGTSFAGMGAAREVILYVFCEPIMILVLVVFESHLVFNANFASLAFG
GLFLLGTSLIILAELAKPPFDDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTCALFLFVAKMGVYHGEFFLNRSVP
IFWLDIVAVLGAVFVSICVGYIEANSTRRKWLWVPELLGLNFIFMLFLGILLKLG

Specific function: Unknown

COG id: COG0650

COG function: function code C; Formate hydrogenlyase subunit 4

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 33070; Mature: 33070

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIILKYLDPIIRVLSFIVLPFLCGGLVQKIRSYSQGRVGAPVFQIFYDTWRMIRKKPVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
GPFSGFFTEASPLIACLSGFAVWSLTSFEWGSFLLIPFLIGIMRFALLAYSVENGTSFAG
CCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MGAAREVILYVFCEPIMILVLVVFESHLVFNANFASLAFGGLFLLGTSLIILAELAKPPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
DDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTCALFLFVAKMGVYHGEFFLNRSVP
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
IFWLDIVAVLGAVFVSICVGYIEANSTRRKWLWVPELLGLNFIFMLFLGILLKLG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIILKYLDPIIRVLSFIVLPFLCGGLVQKIRSYSQGRVGAPVFQIFYDTWRMIRKKPVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
GPFSGFFTEASPLIACLSGFAVWSLTSFEWGSFLLIPFLIGIMRFALLAYSVENGTSFAG
CCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MGAAREVILYVFCEPIMILVLVVFESHLVFNANFASLAFGGLFLLGTSLIILAELAKPPF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC
DDPRTHLELTMVHEAMLLEASGSRRALFELAQQFKTCALFLFVAKMGVYHGEFFLNRSVP
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
IFWLDIVAVLGAVFVSICVGYIEANSTRRKWLWVPELLGLNFIFMLFLGILLKLG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton; reduced ferredoxin [C]

Specific reaction: Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA