Click here to switch to the map view.

The map label for this gene is 45659153

Identifier: 45659153

GI number: 45659153

Start: 4089512

End: 4091068

Strand: Direct

Name: 45659153

Synonym: LIC13334

Alternate gene names: NA

Gene position: 4089512-4091068 (Clockwise)

Preceding gene: 45659152

Following gene: 45659154

Centisome position: 95.61

GC content: 39.95

Gene sequence:

>1557_bases
ATGAGCGGTCGCGTTTACGAATGGAAAAACTTAGGAGATTCCAGAACCGTAAAAGCGGATGTAGTGATCGTAGGAACTGG
ATGTGGTGGTGCCACTTTAGCTTATGAACTTTCTAAAAACGGAAAGAAGGTAATAATGATTGAAGAAGGTGGTTACTATC
ACACAGGAACATTCGACAACCACGAACTTAACATGGCCGGAAAGGTTTCCGCAGAAAGAAACATGGCTACCGATGCAACT
GGTACAATCAATTTAGTTTATGGAAAAAACGTAGGTGGAGCTTCCGTTCACTACTGGGCAGACAGCTACAGAACCCCTGA
TGACAGACTCAATCTTTGGAAAAAAACATACGGAGTTCAAGGTCATTCTCCCGAAGACCTAAATCCCTATTGGAAGGAAT
TAGATGAAACTCTAAACGTTCATCCCGCTAAAGAAGAATATTATAATAAAATGAATCAGCTTGTGCGCAAGGCTTGCAAA
TCTCTCAGCTGGGAAGGCAATCCTGTCCCACAAGCCAGAAAGAACTGTCAAAAATCTGGTCATTGTATGCAAGGTTGTAT
GTATGGGGCTAAACAAAGTCAGCTGGTCACACATATTCCTAAAGCAATGTCTTTAGGAACAGATATTTATGCAGATTGTA
AAGCAGTTCGTTTAGAACTAAAAGGCGATAAAGTAGAATTTTTAGAAGCAGTAATGATCGACCGTCCTTCCGGAAAAGAA
TCGAATATCGTTTTAAAATTTGAAGCTCCGATTTTTGCAATCTCTGCCGGTGGTTTCGGTAGTTCTACATTCTTACTTAA
AAACGGATGGAAGAAAAAACTTCCGGCTCTTGGTGAATACTTAGCAATCAATCCCTCCCCTTTCATTCATGCGTTTTATG
AAGAGCCTATCATTCAATGGAGAAATATTCCTTCCGCATTTGGTGTGGAAGAATTCCGCTTAGCCCGTTTTAAAGAAGAT
GGAAGTTATATTGAAGGTGGCTTCTTAATTATGGCCAATCAACTTCAACCTGGAAGTCTTGCGGCTTTAATTCCTGGCTT
TGGTGTTGAACACAGAGAAATCATGAAACAACTTCCTCATATAGGAGGTACCATCGGGTGGATAGATGATGTTCCTTCAG
AGTTAGGAAATATTTCTGTAAGCGCTTCCGGTAAACGTACCATTACATACAACTTTGGAAAGTTGACAAAAGAATTTTTA
AAAGACTGCATTCGTAAACAAGCTCAATTAAATTTTAGTGCCGGAGCTAAATGGATTCTTCTACCGGATTTGAAACGTAC
AAAAATATTTTCCGAAAAAGAAATAGATAAAATCAATTTACTCGAACTTAACCCCGCTTCTATGATGATGGCCGCTCCTC
ATCCTGCAGGAGGATGTAGAATGGGACAAGATCCTTTTACATCCGTAGTAGATTGGAGACACAGAGTTCATGGTTTAAAA
AATTTATACGTTTCCGATTCCAGCGTATTTCCCACGGGTGTTTCCGTCGATCCAAGTTATACGATTATGGCATTTAGCAA
ACAAGCCGCCAAATTCATTCTCGAAGATTCGGAATAA

Upstream 100 bases:

>100_bases
AATCTTCTTTCAAAGCAATTTCGTATGACGGACCTTTTGGAAATCCTCCAGAAAAATTAAGCGAATCCAGAATCTATTAT
AAAAAAATCTTGGGGGAATT

Downstream 100 bases:

>100_bases
AATTATAGTTTTATAAAATAGGTTTCGATTCTATAAAATCGCAAAATAACAATTTTATGCAGAAATTGATTGGGTGATCA
TTAGATTTTTGAAAATTTTA

Product: GMC oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MSGRVYEWKNLGDSRTVKADVVIVGTGCGGATLAYELSKNGKKVIMIEEGGYYHTGTFDNHELNMAGKVSAERNMATDAT
GTINLVYGKNVGGASVHYWADSYRTPDDRLNLWKKTYGVQGHSPEDLNPYWKELDETLNVHPAKEEYYNKMNQLVRKACK
SLSWEGNPVPQARKNCQKSGHCMQGCMYGAKQSQLVTHIPKAMSLGTDIYADCKAVRLELKGDKVEFLEAVMIDRPSGKE
SNIVLKFEAPIFAISAGGFGSSTFLLKNGWKKKLPALGEYLAINPSPFIHAFYEEPIIQWRNIPSAFGVEEFRLARFKED
GSYIEGGFLIMANQLQPGSLAALIPGFGVEHREIMKQLPHIGGTIGWIDDVPSELGNISVSASGKRTITYNFGKLTKEFL
KDCIRKQAQLNFSAGAKWILLPDLKRTKIFSEKEIDKINLLELNPASMMMAAPHPAGGCRMGQDPFTSVVDWRHRVHGLK
NLYVSDSSVFPTGVSVDPSYTIMAFSKQAAKFILEDSE

Sequences:

>Translated_518_residues
MSGRVYEWKNLGDSRTVKADVVIVGTGCGGATLAYELSKNGKKVIMIEEGGYYHTGTFDNHELNMAGKVSAERNMATDAT
GTINLVYGKNVGGASVHYWADSYRTPDDRLNLWKKTYGVQGHSPEDLNPYWKELDETLNVHPAKEEYYNKMNQLVRKACK
SLSWEGNPVPQARKNCQKSGHCMQGCMYGAKQSQLVTHIPKAMSLGTDIYADCKAVRLELKGDKVEFLEAVMIDRPSGKE
SNIVLKFEAPIFAISAGGFGSSTFLLKNGWKKKLPALGEYLAINPSPFIHAFYEEPIIQWRNIPSAFGVEEFRLARFKED
GSYIEGGFLIMANQLQPGSLAALIPGFGVEHREIMKQLPHIGGTIGWIDDVPSELGNISVSASGKRTITYNFGKLTKEFL
KDCIRKQAQLNFSAGAKWILLPDLKRTKIFSEKEIDKINLLELNPASMMMAAPHPAGGCRMGQDPFTSVVDWRHRVHGLK
NLYVSDSSVFPTGVSVDPSYTIMAFSKQAAKFILEDSE
>Mature_517_residues
SGRVYEWKNLGDSRTVKADVVIVGTGCGGATLAYELSKNGKKVIMIEEGGYYHTGTFDNHELNMAGKVSAERNMATDATG
TINLVYGKNVGGASVHYWADSYRTPDDRLNLWKKTYGVQGHSPEDLNPYWKELDETLNVHPAKEEYYNKMNQLVRKACKS
LSWEGNPVPQARKNCQKSGHCMQGCMYGAKQSQLVTHIPKAMSLGTDIYADCKAVRLELKGDKVEFLEAVMIDRPSGKES
NIVLKFEAPIFAISAGGFGSSTFLLKNGWKKKLPALGEYLAINPSPFIHAFYEEPIIQWRNIPSAFGVEEFRLARFKEDG
SYIEGGFLIMANQLQPGSLAALIPGFGVEHREIMKQLPHIGGTIGWIDDVPSELGNISVSASGKRTITYNFGKLTKEFLK
DCIRKQAQLNFSAGAKWILLPDLKRTKIFSEKEIDKINLLELNPASMMMAAPHPAGGCRMGQDPFTSVVDWRHRVHGLKN
LYVSDSSVFPTGVSVDPSYTIMAFSKQAAKFILEDSE

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: NA

Molecular weight: Translated: 57459; Mature: 57328

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRVYEWKNLGDSRTVKADVVIVGTGCGGATLAYELSKNGKKVIMIEEGGYYHTGTFDN
CCCCEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEECCCCCC
HELNMAGKVSAERNMATDATGTINLVYGKNVGGASVHYWADSYRTPDDRLNLWKKTYGVQ
CEECCEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
GHSPEDLNPYWKELDETLNVHPAKEEYYNKMNQLVRKACKSLSWEGNPVPQARKNCQKSG
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
HCMQGCMYGAKQSQLVTHIPKAMSLGTDIYADCKAVRLELKGDKVEFLEAVMIDRPSGKE
CHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCC
SNIVLKFEAPIFAISAGGFGSSTFLLKNGWKKKLPALGEYLAINPSPFIHAFYEEPIIQW
CCEEEEEECCEEEEECCCCCCEEEEEECCCHHHCCCCCCEEEECCCCCEEEHHHCCHHHH
RNIPSAFGVEEFRLARFKEDGSYIEGGFLIMANQLQPGSLAALIPGFGVEHREIMKQLPH
CCCCCCCCHHHHHHHHHHCCCCEECCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHCCC
IGGTIGWIDDVPSELGNISVSASGKRTITYNFGKLTKEFLKDCIRKQAQLNFSAGAKWIL
CCCCCCCHHHHHHHHCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LPDLKRTKIFSEKEIDKINLLELNPASMMMAAPHPAGGCRMGQDPFTSVVDWRHRVHGLK
CCCCHHHHCCCCCCCCEEEEEEECHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NLYVSDSSVFPTGVSVDPSYTIMAFSKQAAKFILEDSE
EEEECCCCCCCCCCCCCCCEEEEEECHHHHHHEECCCC
>Mature Secondary Structure 
SGRVYEWKNLGDSRTVKADVVIVGTGCGGATLAYELSKNGKKVIMIEEGGYYHTGTFDN
CCCEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEECCCCCC
HELNMAGKVSAERNMATDATGTINLVYGKNVGGASVHYWADSYRTPDDRLNLWKKTYGVQ
CEECCEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCC
GHSPEDLNPYWKELDETLNVHPAKEEYYNKMNQLVRKACKSLSWEGNPVPQARKNCQKSG
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
HCMQGCMYGAKQSQLVTHIPKAMSLGTDIYADCKAVRLELKGDKVEFLEAVMIDRPSGKE
CHHHHHHCCCCHHHHHHHHHHHHHCCCCHHCCCEEEEEEECCCHHHHHHHHHHCCCCCCC
SNIVLKFEAPIFAISAGGFGSSTFLLKNGWKKKLPALGEYLAINPSPFIHAFYEEPIIQW
CCEEEEEECCEEEEECCCCCCEEEEEECCCHHHCCCCCCEEEECCCCCEEEHHHCCHHHH
RNIPSAFGVEEFRLARFKEDGSYIEGGFLIMANQLQPGSLAALIPGFGVEHREIMKQLPH
CCCCCCCCHHHHHHHHHHCCCCEECCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHCCC
IGGTIGWIDDVPSELGNISVSASGKRTITYNFGKLTKEFLKDCIRKQAQLNFSAGAKWIL
CCCCCCCHHHHHHHHCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LPDLKRTKIFSEKEIDKINLLELNPASMMMAAPHPAGGCRMGQDPFTSVVDWRHRVHGLK
CCCCHHHHCCCCCCCCEEEEEEECHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NLYVSDSSVFPTGVSVDPSYTIMAFSKQAAKFILEDSE
EEEECCCCCCCCCCCCCCCEEEEEECHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]