| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is choB [H]
Identifier: 45659017
GI number: 45659017
Start: 3915816
End: 3917384
Strand: Direct
Name: choB [H]
Synonym: LIC13195
Alternate gene names: 45659017
Gene position: 3915816-3917384 (Clockwise)
Preceding gene: 45659016
Following gene: 45659018
Centisome position: 91.55
GC content: 40.6
Gene sequence:
>1569_bases ATGTCAAAAGATAATACTCGTTACGACGCAATCGTTATTGGCTCTGGATTTGGTGGTTCCATCAGCGCCTTAAGACTTTC AGAAAAAGGCCAAAGGGTTTTAGTATTAGAAAGAGGAAAAAAATATTCTCCCGGAGATTTTCCAAGGGACGTACGTAAAA TAGACAATCTTCTCTGGCGTTATCCCAAAAAGAAAAAGTCTTTGGGTTTATACGAACTCAATTTTTTTAGTGGACTCGGA ACCGTAACCGCTTCCGGTTTAGGCGGAGGTTCCTTGATCTACGCGAATATTCATATCCGTCCCGATCATAAGGTTTTTGA AGATCCTCGCTGGCCAGCTCCGTTTAACAGAGATTATTTGGATCCCTATTTTGATAAAGTTGCCTCTAAATTTGATGTAA AACCGGTTCCACCAGAATGGGATCTTCCAAAAAGAAATAGATTTAAAGCCGCTGCGGATTTAAACAGACATACTCATTTT GATCCGGATGCAGCTGCAAGTTGGCTAAAACCTTCCAGACCAGGACAATCTACTTGCATACGTTGTGCGGAATGTGAGTT CGGATGTAATCACGGAGCTAAAAACACATTAGATTTTAATTATATTGCAGACGCCGAAAAAAACGGTGCCGTGTTTCAAA CCAATTCCCTAGCATCTCATATAGCCCCAGATAGTCAAAACGGTTACGTAGTTTATTATGAAAATACGGAAACCGGAGAA AAAAAATCGGTATATGCTAAAAGGGTCATACTTTCCGCAGGAACGTTAGGTACAAATAGGATTCTTTTTAACAGCAGAGA CAGATACAAAACCCTACCAAATCTAAGCAAACAACTTGGAAAAGGATATTCTGGAAATGGGGACTTTTTAGGCGGAATTG AATCGAGTAAAAGTGAACTCATACCTTGGGACGGACCGGACGTAACTACCGTAATCAATTATTTTCCACAAGGATTTCAA TTTACAATGGCAGCGCCTACGTTCAGTCAACCGGTAATGTCAGTACTTGCTTCATTAGGAATTGCTAAACCGAATTGGTT TTTAAAGCTGATTGGTCCTATCTTTTGGAAAAGTTTGAAATGGATTCTTCCTTTTGTATTTAAAAAAGGATTACTTTCCA AACCTCTACCACCTGGTCTTCCGGGAGCGGGTAATCCAAACTATATGACAAATCTATTTGCCATAGGAAGAGACAATGCA AATGGGAAAATCGTACGTCGTGGCAAAAACATAGACGTGAAGTGGAAGTATTCTAAAGAAAACCAAACCCTCATTCAGAA CATGACTGCTTCTATGCAGCAGATAGGAGACGCATACGGCGGACAGTTCGGTCCGTTAGCTACCTTTTTGTTATTCAATC GGATCATCTCAGTTCATTCTTTAGGAGGTTGTATTCTTTCCGCCAATCCGGACAAAGGAGTTGTATCCGAAACGGGAGAA GTATTCGGTTATAAAAATCTATTCATTGCCGATGGATCTGTAATTCCTTCTTCAATCGGATTTCATCCTGTGATGACAAT TTCCGCCGTGGCCGAACATACTGCAGCTTCCATCTGTGCCGGATTATAA
Upstream 100 bases:
>100_bases GACGCCTACAAGGACGTATATCCATTTATACTACAGTCTTTAAATCGATATTAAAGAATTTTGAATTTTATAAATTTATA ATTTTATTTTACAGGAAAAT
Downstream 100 bases:
>100_bases TCCGGCATTAAAAGTAACGTTGTTACTCAGAACTATAAAATTGAGTACGCAGTATTTTGCTATAAAACAGTACTTTATAA TAAAAATCTGCGGTACCCGA
Product: cholesterol oxidase precursor
Products: NA
Alternate protein names: CHOD [H]
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MSKDNTRYDAIVIGSGFGGSISALRLSEKGQRVLVLERGKKYSPGDFPRDVRKIDNLLWRYPKKKKSLGLYELNFFSGLG TVTASGLGGGSLIYANIHIRPDHKVFEDPRWPAPFNRDYLDPYFDKVASKFDVKPVPPEWDLPKRNRFKAAADLNRHTHF DPDAAASWLKPSRPGQSTCIRCAECEFGCNHGAKNTLDFNYIADAEKNGAVFQTNSLASHIAPDSQNGYVVYYENTETGE KKSVYAKRVILSAGTLGTNRILFNSRDRYKTLPNLSKQLGKGYSGNGDFLGGIESSKSELIPWDGPDVTTVINYFPQGFQ FTMAAPTFSQPVMSVLASLGIAKPNWFLKLIGPIFWKSLKWILPFVFKKGLLSKPLPPGLPGAGNPNYMTNLFAIGRDNA NGKIVRRGKNIDVKWKYSKENQTLIQNMTASMQQIGDAYGGQFGPLATFLLFNRIISVHSLGGCILSANPDKGVVSETGE VFGYKNLFIADGSVIPSSIGFHPVMTISAVAEHTAASICAGL
Sequences:
>Translated_522_residues MSKDNTRYDAIVIGSGFGGSISALRLSEKGQRVLVLERGKKYSPGDFPRDVRKIDNLLWRYPKKKKSLGLYELNFFSGLG TVTASGLGGGSLIYANIHIRPDHKVFEDPRWPAPFNRDYLDPYFDKVASKFDVKPVPPEWDLPKRNRFKAAADLNRHTHF DPDAAASWLKPSRPGQSTCIRCAECEFGCNHGAKNTLDFNYIADAEKNGAVFQTNSLASHIAPDSQNGYVVYYENTETGE KKSVYAKRVILSAGTLGTNRILFNSRDRYKTLPNLSKQLGKGYSGNGDFLGGIESSKSELIPWDGPDVTTVINYFPQGFQ FTMAAPTFSQPVMSVLASLGIAKPNWFLKLIGPIFWKSLKWILPFVFKKGLLSKPLPPGLPGAGNPNYMTNLFAIGRDNA NGKIVRRGKNIDVKWKYSKENQTLIQNMTASMQQIGDAYGGQFGPLATFLLFNRIISVHSLGGCILSANPDKGVVSETGE VFGYKNLFIADGSVIPSSIGFHPVMTISAVAEHTAASICAGL >Mature_521_residues SKDNTRYDAIVIGSGFGGSISALRLSEKGQRVLVLERGKKYSPGDFPRDVRKIDNLLWRYPKKKKSLGLYELNFFSGLGT VTASGLGGGSLIYANIHIRPDHKVFEDPRWPAPFNRDYLDPYFDKVASKFDVKPVPPEWDLPKRNRFKAAADLNRHTHFD PDAAASWLKPSRPGQSTCIRCAECEFGCNHGAKNTLDFNYIADAEKNGAVFQTNSLASHIAPDSQNGYVVYYENTETGEK KSVYAKRVILSAGTLGTNRILFNSRDRYKTLPNLSKQLGKGYSGNGDFLGGIESSKSELIPWDGPDVTTVINYFPQGFQF TMAAPTFSQPVMSVLASLGIAKPNWFLKLIGPIFWKSLKWILPFVFKKGLLSKPLPPGLPGAGNPNYMTNLFAIGRDNAN GKIVRRGKNIDVKWKYSKENQTLIQNMTASMQQIGDAYGGQFGPLATFLLFNRIISVHSLGGCILSANPDKGVVSETGEV FGYKNLFIADGSVIPSSIGFHPVMTISAVAEHTAASICAGL
Specific function: Unknown
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GMC oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000172 - InterPro: IPR007867 - InterPro: IPR006311 [H]
Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]
EC number: =1.1.3.6 [H]
Molecular weight: Translated: 57375; Mature: 57244
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKDNTRYDAIVIGSGFGGSISALRLSEKGQRVLVLERGKKYSPGDFPRDVRKIDNLLWR CCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH YPKKKKSLGLYELNFFSGLGTVTASGLGGGSLIYANIHIRPDHKVFEDPRWPAPFNRDYL CCCHHHCCCEEEEHHHHCCCHHEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC DPYFDKVASKFDVKPVPPEWDLPKRNRFKAAADLNRHTHFDPDAAASWLKPSRPGQSTCI CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHEE RCAECEFGCNHGAKNTLDFNYIADAEKNGAVFQTNSLASHIAPDSQNGYVVYYENTETGE EEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCHHHHCCCCCCCCEEEEECCCCCCC KKSVYAKRVILSAGTLGTNRILFNSRDRYKTLPNLSKQLGKGYSGNGDFLGGIESSKSEL HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCC IPWDGPDVTTVINYFPQGFQFTMAAPTFSQPVMSVLASLGIAKPNWFLKLIGPIFWKSLK CCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH WILPFVFKKGLLSKPLPPGLPGAGNPNYMTNLFAIGRDNANGKIVRRGKNIDVKWKYSKE HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEEECCC NQTLIQNMTASMQQIGDAYGGQFGPLATFLLFNRIISVHSLGGCILSANPDKGVVSETGE CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCCC VFGYKNLFIADGSVIPSSIGFHPVMTISAVAEHTAASICAGL CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKDNTRYDAIVIGSGFGGSISALRLSEKGQRVLVLERGKKYSPGDFPRDVRKIDNLLWR CCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH YPKKKKSLGLYELNFFSGLGTVTASGLGGGSLIYANIHIRPDHKVFEDPRWPAPFNRDYL CCCHHHCCCEEEEHHHHCCCHHEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC DPYFDKVASKFDVKPVPPEWDLPKRNRFKAAADLNRHTHFDPDAAASWLKPSRPGQSTCI CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHEE RCAECEFGCNHGAKNTLDFNYIADAEKNGAVFQTNSLASHIAPDSQNGYVVYYENTETGE EEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCHHHHCCCCCCCCEEEEECCCCCCC KKSVYAKRVILSAGTLGTNRILFNSRDRYKTLPNLSKQLGKGYSGNGDFLGGIESSKSEL HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCC IPWDGPDVTTVINYFPQGFQFTMAAPTFSQPVMSVLASLGIAKPNWFLKLIGPIFWKSLK CCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH WILPFVFKKGLLSKPLPPGLPGAGNPNYMTNLFAIGRDNANGKIVRRGKNIDVKWKYSKE HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEEECCC NQTLIQNMTASMQQIGDAYGGQFGPLATFLLFNRIISVHSLGGCILSANPDKGVVSETGE CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCCC VFGYKNLFIADGSVIPSSIGFHPVMTISAVAEHTAASICAGL CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1879703; 2271066; 2051487 [H]