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The map label for this gene is dedA [H]

Identifier: 45658823

GI number: 45658823

Start: 3642311

End: 3642955

Strand: Reverse

Name: dedA [H]

Synonym: LIC12996

Alternate gene names: 45658823

Gene position: 3642955-3642311 (Counterclockwise)

Preceding gene: 45658824

Following gene: 45658822

Centisome position: 85.17

GC content: 35.5

Gene sequence:

>645_bases
TTGGAAATTTTTAAGTTTTTACTCGATTTCTTTTTAAACCTGGAAACGCATTTGGATACGATCATACAGACGTATCAAAA
TGGAACATACGTTATACTATTCTTGATCATTTTTGCCGAAACTGGCTTGATCGTAACTCCTTTTCTTCCAGGAGATTCTT
TGCTTTTTGCCGTCGGGGCTTTTATCGCTAGAGGTTCTCTGGATCTCGGAAGTACATTAGTTCTTCTTATTATTGCAGCT
ATATTAGGGGATACTGTGAACTATTCGGTGGGAAATTTTATAGGAGAAAAAATATTAGAAAAAGAAAAAATACCCTTGAT
CAAAAAAGAACATCTCCAAAAAGCGCACCGGTTTTATGAGGTTTATGGTGGAAAGACGATCATTATCGCCAGATTTATAC
CGATTATACGCACTTTTGCTCCTTTTGTGGCCGGAATTGGAACCATGACTTATGTTAAATTTATTGCATATAATGTGATG
GGTGGAATTCTATGGATCACAATTTTTATTCTCGGAGGGTATTATTTCGGAAACCTGGATTTCGTAAAAAGAAATTTTAA
AATTGTAATATTTGCGATTATTCTTATTTCTGTGATGCCAGCTGTGATTGAATACCTGAAGGAAAGGAGAAAGGGTAGGG
TTTAG

Upstream 100 bases:

>100_bases
CTGCCACATTTTGTTACAAACTTACAGAAGATTTTCCTTCCAGTTTTTGGGATAGGCTCTAAATACAATCTACAATACGA
CTCGCAAGTAGGGAGGCAAT

Downstream 100 bases:

>100_bases
GAATTTTTAATTTAAAAAGCTCGCCCAAATATTAATAAAAGATGAACTTAAGAGAAAGTTTTATTTCTAAATTCGCGGCG
AGTTATGTAAAACCTAGATT

Product: cytoplasmic membrane protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MEIFKFLLDFFLNLETHLDTIIQTYQNGTYVILFLIIFAETGLIVTPFLPGDSLLFAVGAFIARGSLDLGSTLVLLIIAA
ILGDTVNYSVGNFIGEKILEKEKIPLIKKEHLQKAHRFYEVYGGKTIIIARFIPIIRTFAPFVAGIGTMTYVKFIAYNVM
GGILWITIFILGGYYFGNLDFVKRNFKIVIFAIILISVMPAVIEYLKERRKGRV

Sequences:

>Translated_214_residues
MEIFKFLLDFFLNLETHLDTIIQTYQNGTYVILFLIIFAETGLIVTPFLPGDSLLFAVGAFIARGSLDLGSTLVLLIIAA
ILGDTVNYSVGNFIGEKILEKEKIPLIKKEHLQKAHRFYEVYGGKTIIIARFIPIIRTFAPFVAGIGTMTYVKFIAYNVM
GGILWITIFILGGYYFGNLDFVKRNFKIVIFAIILISVMPAVIEYLKERRKGRV
>Mature_214_residues
MEIFKFLLDFFLNLETHLDTIIQTYQNGTYVILFLIIFAETGLIVTPFLPGDSLLFAVGAFIARGSLDLGSTLVLLIIAA
ILGDTVNYSVGNFIGEKILEKEKIPLIKKEHLQKAHRFYEVYGGKTIIIARFIPIIRTFAPFVAGIGTMTYVKFIAYNVM
GGILWITIFILGGYYFGNLDFVKRNFKIVIFAIILISVMPAVIEYLKERRKGRV

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=49.5238095238095, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1789481, Length=148, Percent_Identity=37.1621621621622, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1789384, Length=177, Percent_Identity=31.0734463276836, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786252, Length=159, Percent_Identity=29.559748427673, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24187; Mature: 24187

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFKFLLDFFLNLETHLDTIIQTYQNGTYVILFLIIFAETGLIVTPFLPGDSLLFAVGA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
FIARGSLDLGSTLVLLIIAAILGDTVNYSVGNFIGEKILEKEKIPLIKKEHLQKAHRFYE
HHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VYGGKTIIIARFIPIIRTFAPFVAGIGTMTYVKFIAYNVMGGILWITIFILGGYYFGNLD
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
FVKRNFKIVIFAIILISVMPAVIEYLKERRKGRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIFKFLLDFFLNLETHLDTIIQTYQNGTYVILFLIIFAETGLIVTPFLPGDSLLFAVGA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
FIARGSLDLGSTLVLLIIAAILGDTVNYSVGNFIGEKILEKEKIPLIKKEHLQKAHRFYE
HHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VYGGKTIIIARFIPIIRTFAPFVAGIGTMTYVKFIAYNVMGGILWITIFILGGYYFGNLD
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
FVKRNFKIVIFAIILISVMPAVIEYLKERRKGRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]