Click here to switch to the map view.

The map label for this gene is 45658806

Identifier: 45658806

GI number: 45658806

Start: 3616632

End: 3617357

Strand: Reverse

Name: 45658806

Synonym: LIC12979

Alternate gene names: NA

Gene position: 3617357-3616632 (Counterclockwise)

Preceding gene: 45658809

Following gene: 45658804

Centisome position: 84.57

GC content: 38.84

Gene sequence:

>726_bases
ATGGAGGAGATCTATGTCTACGACGAAAGTAAAAATCGAGGAGGTAAAGAAATGATGAACCTTTCTTCGATTTTAGTTTC
TTATTTTTATCAATATCCACATGCGATGTTTATAACAAATCGGTGCGGGATGATTGAATATATTAATCCGGTATTTGAAA
CACTTTCCGGTTATAGCAGAAGTGAACTGATTGGACAGAACCCAAAGTTGTTTCAAGCGGGAGTACACGACCCTAATTTT
TACGAAGAATTATGGAAAACAATTCTTTCAGGCAAAGAATACGAAGGGAATTTCTTAAATCGAAATGGATCAGGAGAAAC
GATTGCTTGGAAGGAAAGGATTACCCCTCTTCGAGACGAAGCGGGAAACATTTCAAATTTCTTATGTAGAGTAGACCTTT
CTTCGAAAGACGAGGTCAGTGCAGTTCCAACCGAAGAACAGTCGATGCCCGTCGAAAATTTTCAAAACACAAAAGTTAAA
GAATCTCTTTTCCCACAACTGCAAAGGGAATACGGGCTGACATGTCAGGAAGCGAAAATCTGTGAACGTTTAGTTGCTGG
GCAGACAAGAGCTTGTCTCATTCAACAACTTGGAGTACATTCAGGAACTCTAAAGAACCATCTCAAAGCGATTTATAGAA
AAACAATCGAAAAGGATTTGCCTCAACCAGGACAAGGAAGAGATAAACTTCAAAGACTTACTATGTTTTTGATTCGTCTC
TGCTGA

Upstream 100 bases:

>100_bases
CTGAATGTTTTCGAAGGCCACTTAGTTGACGAATCCAACTAAATACTTAGGTATGTTTATAGCGGTTCAATATAGATAAG
AATCGTTTATTCCTTAAGAA

Downstream 100 bases:

>100_bases
TCAGATTTAAAAACACAAGGAATTGGAGTGGAACACAATCGATTCTGATTCCTTGTGTTTTAACGTTGCCTACACATTTT
TTCTAAGTAATCTTCTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Multi-Sensor Hybrid Histidine Kinase; Diguanylate Cyclase With PAS/PAC Sensor; Multi-Sensor Signal Transduction Histidine Kinase; Signal-Transducing Histidine Kinase; Sensory Box Protein; PAS/PAC Sensor Protein; PAS Sensor Protein; PAS/PAC Sensor Signal Transduction Histidine Kinase; Signal Transduction Protein; Sensory Box/GGDEF Family Protein; Signaling Protein; Signal Transduction Histidine Kinase; Sensor Histidine Kinase; GGDEF Domain-Containing Protein; Diguanylate Cyclase With Pas/Pac Sensor; PAS Fold Family; Sensory Box Histidine Kinase/Response Regulator Protein; Two-Component Hybrid Sensor And Regulator; Response Receiver Sensor Phosphatase; Hybrid Sensor And Regulator; Diguanylate Cyclase/Phosphodiesterase With PAS/PAC Sensor; Signal-Transducing Histidine Kinase/Response Regulator; Regulatory Components Of Sensory Transduction System; GGDEF/PAS/PAC-Domain-Containing Protein; Multidomain Fusion Protein; Response Regulator; PAS/PAC Domain-Containing Protein; GGDEF/PAS Domain-Containing Protein; Pas/Pac Sensor Hybrid Histidine Kinase; NMT1/THI5 Like Family; Diguanylate Cyclase; C-Like Stage II Sporulation E; Signal-Transducing Histidine Kinase-Like; Hybrid Sensor And Regulator Protein; Sensory Box Histidine Kinase/Response Regulator; Sensory Box/GGDEF Domain Protein; GGDEF Domain/Pas/Pac Sensor Domain Protein; Sensory Box-Containing Diguanylate Cyclase; Hybrid Sensory Kinase; Sensory Box Protein/Response Regulator; Sensory Box/Response Regulator; Diguanylate Cyclase Domain Protein; Sensor Histidine Kinase Response Regulator Lipoprotein; EAL And GGDEF Domain-Containing Protein; PAS GGDEF And EAL Domain-Containing Protein; PAS/PAC/GGDEF-Domain-Containing Protein; PAS Domain S-Box; Diguanylate Cyclase With PAS/PAC And GAF Sensors; GGDEF/EAL/PAC/PAS-Domain-Containing Protein; Signal Transduction Domain Protein; Oxygen And Light Sensing His Kinase; Histidine Kinase Hybrid

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MEEIYVYDESKNRGGKEMMNLSSILVSYFYQYPHAMFITNRCGMIEYINPVFETLSGYSRSELIGQNPKLFQAGVHDPNF
YEELWKTILSGKEYEGNFLNRNGSGETIAWKERITPLRDEAGNISNFLCRVDLSSKDEVSAVPTEEQSMPVENFQNTKVK
ESLFPQLQREYGLTCQEAKICERLVAGQTRACLIQQLGVHSGTLKNHLKAIYRKTIEKDLPQPGQGRDKLQRLTMFLIRL
C

Sequences:

>Translated_241_residues
MEEIYVYDESKNRGGKEMMNLSSILVSYFYQYPHAMFITNRCGMIEYINPVFETLSGYSRSELIGQNPKLFQAGVHDPNF
YEELWKTILSGKEYEGNFLNRNGSGETIAWKERITPLRDEAGNISNFLCRVDLSSKDEVSAVPTEEQSMPVENFQNTKVK
ESLFPQLQREYGLTCQEAKICERLVAGQTRACLIQQLGVHSGTLKNHLKAIYRKTIEKDLPQPGQGRDKLQRLTMFLIRL
C
>Mature_241_residues
MEEIYVYDESKNRGGKEMMNLSSILVSYFYQYPHAMFITNRCGMIEYINPVFETLSGYSRSELIGQNPKLFQAGVHDPNF
YEELWKTILSGKEYEGNFLNRNGSGETIAWKERITPLRDEAGNISNFLCRVDLSSKDEVSAVPTEEQSMPVENFQNTKVK
ESLFPQLQREYGLTCQEAKICERLVAGQTRACLIQQLGVHSGTLKNHLKAIYRKTIEKDLPQPGQGRDKLQRLTMFLIRL
C

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27710; Mature: 27710

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEIYVYDESKNRGGKEMMNLSSILVSYFYQYPHAMFITNRCGMIEYINPVFETLSGYSR
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCH
SELIGQNPKLFQAGVHDPNFYEELWKTILSGKEYEGNFLNRNGSGETIAWKERITPLRDE
HHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHCCCHHHC
AGNISNFLCRVDLSSKDEVSAVPTEEQSMPVENFQNTKVKESLFPQLQREYGLTCQEAKI
CCCHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
CERLVAGQTRACLIQQLGVHSGTLKNHLKAIYRKTIEKDLPQPGQGRDKLQRLTMFLIRL
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
C
C
>Mature Secondary Structure
MEEIYVYDESKNRGGKEMMNLSSILVSYFYQYPHAMFITNRCGMIEYINPVFETLSGYSR
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCH
SELIGQNPKLFQAGVHDPNFYEELWKTILSGKEYEGNFLNRNGSGETIAWKERITPLRDE
HHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHCCCHHHC
AGNISNFLCRVDLSSKDEVSAVPTEEQSMPVENFQNTKVKESLFPQLQREYGLTCQEAKI
CCCHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
CERLVAGQTRACLIQQLGVHSGTLKNHLKAIYRKTIEKDLPQPGQGRDKLQRLTMFLIRL
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
C
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA