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The map label for this gene is nikC [C]

Identifier: 45658780

GI number: 45658780

Start: 3586241

End: 3587002

Strand: Reverse

Name: nikC [C]

Synonym: LIC12953

Alternate gene names: 45658780

Gene position: 3587002-3586241 (Counterclockwise)

Preceding gene: 45658781

Following gene: 45658779

Centisome position: 83.86

GC content: 38.71

Gene sequence:

>762_bases
TTGATTTCCTTTGGTAATGGTCTGAGAATCTTTTTCGTTTTCTTGACCTTAATTGGTGTATTATGGAAAAATCCGCCTAC
AGAAGTTTTTTTAGAAGACAGTTTCTGTTCTGTAACTTGGAGCCATCCTTTTGGTTGTGATCGATTGGGCCGAGACGTAT
ATAGTCTTTTTTCTTACGGAACAATTTCCACTCTTATATTTTCTTTACCTTCTAGGTTATTTACTTTGGCGTTTAGTTCT
TTGATTTGTCTTTTTCAATATTCTTTTCCGTTTACCGGAAGATGGATTTTTACTCCGATTTCTTCTGTGTTTGTTTCCGT
TCCTTCTTTACTTATCGCTTTACTTACGGTCCACGCGTTAGGACAAGGATCCTACGTTTTGATTGTCGCAATTTTGTTAG
GCGATTGGGCATTTTCATACGAGACTCTTCAAAGTAAAATTCGGGAAACGGATGGAAGTGGATTTGTACTTGCTTCTTCT
TTTTTTGGGGCTTCTAGGGTTAACATTTTTCAAAATCATATTTTTCCTTCGGCTTTTCCAGTTTTAAAAGTTCTATTTAC
TACAGGATTACCTGGGGTTGTAATGACGTTGGCACTTTTTAGTTATCTGGGAGTCAGCGCGGGCTCCGACTGGTTCGGCC
CCGGTTTAGGAGAACAAATTTCCTTTGCAAGGGATTATGTTTATTCTGCTCCTTTTGCTTTGGCGATGCCTATCGTAGGG
ATTGTCGGTTTGGTTGCTGCTTTAAGCGTGAAAAAAAAATGA

Upstream 100 bases:

>100_bases
TATTGAGTGCGCTTCTTTTTTATAGTGGCCTTACGTTTTATATTTTCAGTAGGGTTTCCATTCGTTTTCAAGAGAGTCTT
ACCGGTAAGGAGAACCTTTT

Downstream 100 bases:

>100_bases
TTCGATTATCTGCATTTATTTTAATATTATCTATTTTGAATATAGGAATTTTTGCACAAGGTATCGACAAATACTATCGT
TTTCCGGGATCTGGAATGCA

Product: dipeptide/oligopeptide ABC transport system permease protein

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: Oligopeptide ABC Transporter Permease Protein; Peptide ABC Transporter Permease; Oligopeptide ABC Transporter Permease; Dipeptide Transport System Permease Protein DppC; Nickel ABC Transporter Permease Subunit NikC; Dipeptide ABC Transporter; Dipeptide ABC Transporter Permease Protein; Oligopeptide ABC Transporter Permease Protein OppC; Peptide ABC Transporter Permease Protein; Nickel Transporter Permease NikC; ABC Transporter Membrane Spanning Protein; Glutathione Transport System Permease Protein GsiD; Peptide/Opine/Nickel Uptake ABC Transporter Permease; Nickel Import ABC Transporter Permease Subunit NikC; Nickel ABC Transporter; ABC Transporter Membrane Protein; ABC Transporter Permease; Dipeptide/Oligopeptide ABC Transporter Permease; Peptide/Nickel Transport System Permease; Transport System Permease Protein; Nickel Transport Permease Component NikD; Glutathione Transport System Permease GsiD; ABC Transport System Permease Protein; ABC-Type Transport System Permease Protein; Oligopeptide ABC Transporter Permease Component; Dipeptide ABC Transporter Permease Protein DppC; ABC Transporter Inner Membrane Protein; Transport System Inner Membrane Protein; ABC Peptide Transporter Inner Membrane Subunit; Nickel Transport System Permease Protein NikC; Permease Nickel Or Dipeptide Transport; Permease Component Of ABC Transporter; Dipeptide ABC Transporter Membrane Spanning Protein

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MISFGNGLRIFFVFLTLIGVLWKNPPTEVFLEDSFCSVTWSHPFGCDRLGRDVYSLFSYGTISTLIFSLPSRLFTLAFSS
LICLFQYSFPFTGRWIFTPISSVFVSVPSLLIALLTVHALGQGSYVLIVAILLGDWAFSYETLQSKIRETDGSGFVLASS
FFGASRVNIFQNHIFPSAFPVLKVLFTTGLPGVVMTLALFSYLGVSAGSDWFGPGLGEQISFARDYVYSAPFALAMPIVG
IVGLVAALSVKKK

Sequences:

>Translated_253_residues
MISFGNGLRIFFVFLTLIGVLWKNPPTEVFLEDSFCSVTWSHPFGCDRLGRDVYSLFSYGTISTLIFSLPSRLFTLAFSS
LICLFQYSFPFTGRWIFTPISSVFVSVPSLLIALLTVHALGQGSYVLIVAILLGDWAFSYETLQSKIRETDGSGFVLASS
FFGASRVNIFQNHIFPSAFPVLKVLFTTGLPGVVMTLALFSYLGVSAGSDWFGPGLGEQISFARDYVYSAPFALAMPIVG
IVGLVAALSVKKK
>Mature_253_residues
MISFGNGLRIFFVFLTLIGVLWKNPPTEVFLEDSFCSVTWSHPFGCDRLGRDVYSLFSYGTISTLIFSLPSRLFTLAFSS
LICLFQYSFPFTGRWIFTPISSVFVSVPSLLIALLTVHALGQGSYVLIVAILLGDWAFSYETLQSKIRETDGSGFVLASS
FFGASRVNIFQNHIFPSAFPVLKVLFTTGLPGVVMTLALFSYLGVSAGSDWFGPGLGEQISFARDYVYSAPFALAMPIVG
IVGLVAALSVKKK

Specific function: Involved In A Nickel Transport System, Probably Translocates Nickel Through The Bacterial Inner Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane. [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789889, Length=215, Percent_Identity=26.046511627907, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27678; Mature: 27678

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFGNGLRIFFVFLTLIGVLWKNPPTEVFLEDSFCSVTWSHPFGCDRLGRDVYSLFSYG
CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHH
TISTLIFSLPSRLFTLAFSSLICLFQYSFPFTGRWIFTPISSVFVSVPSLLIALLTVHAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GQGSYVLIVAILLGDWAFSYETLQSKIRETDGSGFVLASSFFGASRVNIFQNHIFPSAFP
CCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCHHHH
VLKVLFTTGLPGVVMTLALFSYLGVSAGSDWFGPGLGEQISFARDYVYSAPFALAMPIVG
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHH
IVGLVAALSVKKK
HHHHHHHHHHCCC
>Mature Secondary Structure
MISFGNGLRIFFVFLTLIGVLWKNPPTEVFLEDSFCSVTWSHPFGCDRLGRDVYSLFSYG
CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHH
TISTLIFSLPSRLFTLAFSSLICLFQYSFPFTGRWIFTPISSVFVSVPSLLIALLTVHAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GQGSYVLIVAILLGDWAFSYETLQSKIRETDGSGFVLASSFFGASRVNIFQNHIFPSAFP
CCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCHHHH
VLKVLFTTGLPGVVMTLALFSYLGVSAGSDWFGPGLGEQISFARDYVYSAPFALAMPIVG
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHH
IVGLVAALSVKKK
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA