Click here to switch to the map view.

The map label for this gene is 45658774

Identifier: 45658774

GI number: 45658774

Start: 3576540

End: 3577301

Strand: Direct

Name: 45658774

Synonym: LIC12946

Alternate gene names: NA

Gene position: 3576540-3577301 (Clockwise)

Preceding gene: 45658773

Following gene: 45658775

Centisome position: 83.62

GC content: 35.7

Gene sequence:

>762_bases
ATGCGACTTCCTCTTTCCGTTTGTATCATCACTCTCAACGAAGAAGACAACCTAGAACGTTGTCTGAAACCTTTGGACTT
TGCTTCCGAAATTATAATCGTAGATTCAGGCTCCAAAGATCAAACCGTAGAAATCGCCCAAAAATATAAGGCCAAAGTAC
GTAAAAGAAAATTCGACAATTATGTAAGCCAGAAAAACTTCGCTATTTCTCTCGTTCAAAACGAATGGGTTTTGACCTTG
GACGCAGATGAAGAAGTTTCTACAGATTTAAAGGAAGAAATTTTAACACTTTTTCGAAACGGACTTCCTTCTGCGGACGG
TTATTCTACTCCTAGATTGACCTGGTATTTAGGAAAATGGATCCGTCACGGAGGTTGGTATCCAAACCGAAGAATCCGTC
TTTTTCATAGGTCCAAGGGTAAATTTGGAGGTGGGATCGTTCACGAAACAATCCAGCTTCAAGGTATATGCAAAAAATTG
AATTCTCCAGTATTTCACTATTCCTATAAAAACATAGGAGATCATATACATTTTATTAACACCTATTCAGAGTTAGCTGC
TCAGGAAAAATTCAACGCCGGTAAAAAAAGTGGTCTTTTTCATGCCTTTCTGGAAGGTTTTTACAAAGCTTTTTGGATGT
ATTTTATTCGATTTGGATTTTTAGATGGTAAACAAGGTTTTGTTTTGGCAACTTTCGGATTTTATTATAATTTTCTTAAG
TATATCAAATTGTATGAGATGAATCTAAAAGATAAAAAATAG

Upstream 100 bases:

>100_bases
CTTCAGAATCATCATCAGAGAAGATGTTACAATCGCAAGATTAGAAATTCCTCTCACTCCTGACTTTCAAAGTCTTAGAA
AACAAGATCAAAAAAATTAA

Downstream 100 bases:

>100_bases
AAATTTTTATCCTAAATTCTAAAAACGATAAAATTGTTGAAAAAATCCATATCAACGATTAACAAAATGATTTTATCTAT
TCGTTTTAATGAAAAAAAGT

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRLPLSVCIITLNEEDNLERCLKPLDFASEIIIVDSGSKDQTVEIAQKYKAKVRKRKFDNYVSQKNFAISLVQNEWVLTL
DADEEVSTDLKEEILTLFRNGLPSADGYSTPRLTWYLGKWIRHGGWYPNRRIRLFHRSKGKFGGGIVHETIQLQGICKKL
NSPVFHYSYKNIGDHIHFINTYSELAAQEKFNAGKKSGLFHAFLEGFYKAFWMYFIRFGFLDGKQGFVLATFGFYYNFLK
YIKLYEMNLKDKK

Sequences:

>Translated_253_residues
MRLPLSVCIITLNEEDNLERCLKPLDFASEIIIVDSGSKDQTVEIAQKYKAKVRKRKFDNYVSQKNFAISLVQNEWVLTL
DADEEVSTDLKEEILTLFRNGLPSADGYSTPRLTWYLGKWIRHGGWYPNRRIRLFHRSKGKFGGGIVHETIQLQGICKKL
NSPVFHYSYKNIGDHIHFINTYSELAAQEKFNAGKKSGLFHAFLEGFYKAFWMYFIRFGFLDGKQGFVLATFGFYYNFLK
YIKLYEMNLKDKK
>Mature_253_residues
MRLPLSVCIITLNEEDNLERCLKPLDFASEIIIVDSGSKDQTVEIAQKYKAKVRKRKFDNYVSQKNFAISLVQNEWVLTL
DADEEVSTDLKEEILTLFRNGLPSADGYSTPRLTWYLGKWIRHGGWYPNRRIRLFHRSKGKFGGGIVHETIQLQGICKKL
NSPVFHYSYKNIGDHIHFINTYSELAAQEKFNAGKKSGLFHAFLEGFYKAFWMYFIRFGFLDGKQGFVLATFGFYYNFLK
YIKLYEMNLKDKK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 29564; Mature: 29564

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPLSVCIITLNEEDNLERCLKPLDFASEIIIVDSGSKDQTVEIAQKYKAKVRKRKFDN
CCCCEEEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
YVSQKNFAISLVQNEWVLTLDADEEVSTDLKEEILTLFRNGLPSADGYSTPRLTWYLGKW
HHHCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
IRHGGWYPNRRIRLFHRSKGKFGGGIVHETIQLQGICKKLNSPVFHYSYKNIGDHIHFIN
HHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHCCCCEEEEEH
TYSELAAQEKFNAGKKSGLFHAFLEGFYKAFWMYFIRFGFLDGKQGFVLATFGFYYNFLK
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
YIKLYEMNLKDKK
HHHHHHCCCCCCC
>Mature Secondary Structure
MRLPLSVCIITLNEEDNLERCLKPLDFASEIIIVDSGSKDQTVEIAQKYKAKVRKRKFDN
CCCCEEEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
YVSQKNFAISLVQNEWVLTLDADEEVSTDLKEEILTLFRNGLPSADGYSTPRLTWYLGKW
HHHCCCEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
IRHGGWYPNRRIRLFHRSKGKFGGGIVHETIQLQGICKKLNSPVFHYSYKNIGDHIHFIN
HHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHCCCCEEEEEH
TYSELAAQEKFNAGKKSGLFHAFLEGFYKAFWMYFIRFGFLDGKQGFVLATFGFYYNFLK
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
YIKLYEMNLKDKK
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]