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The map label for this gene is rpoA

Identifier: 45658676

GI number: 45658676

Start: 3455526

End: 3456503

Strand: Reverse

Name: rpoA

Synonym: LIC12846

Alternate gene names: 45658676

Gene position: 3456503-3455526 (Counterclockwise)

Preceding gene: 45658677

Following gene: 45658675

Centisome position: 80.81

GC content: 39.98

Gene sequence:

>978_bases
TTGTCTCTCAAAAGCTTACTCAAAGGATTTAAACGTCCTAAGAAGATTGAATTCAACACGGAAGCGAACACTCCCAATTA
TGGGAAGTTCGTTGCAGAGCCATTTGAAAGGGGTTTTGCGACAACTATCGGTAACTCTCTCAGAAGGACTTTGATGTCCT
CGATTGAGGGAGCTGCGATTTCTGCCATTCGGATCGAAGGTGTAAACCATGAGTTTTCCTTTATCGAAGGAGTTGCAGAG
GACGTAACGAGAATCATTCTGAACTTAAAACAAGTTCGCATTAAATACGAGCCAGAAGAAAAAGATCAGAGCAAAATCAT
TCATCTCGAATTGAAAGGTGCTGGTTATTTTAGAGCGGGTGATCTTGCCGTGGATTCTTCCATTGAGATCATGAATCCGG
ATCTTCATATCGCTACTCTCAATGAAGATGCAAATCTGGTTATGGATTTGGAAATTCAAAGAGGAAGAGGGTATGTTCCT
GCGGAAGAAAAGAAAAAAGACATAGAAGTTCTTGGAACCATTCCTGTGGACTCTATTTTTTCTCCGGTTCAGAAAGTAGT
TTTTGAAGTTTCCGAAACCCGTGTAGCACAAAGATCTGATTATGAAAAACTGACTTTAGAAGTTTGGACGGATGGTTCTG
TTTCTCCGGACGACGCGGTAGCTCAGGCTGCGAAAATCTTAAAAGAACATCTTACGGTATTTATCAATTTCGAAGAAGAA
TTGGAAGAAGAAGATGACGAATTGGATGAAGCCGATGAAAAACTTAAAGCTTCTTTATCGAAACACGTGGAAGAATTGGA
GCTTTCCGTTCGTTCTCTCAACGTTCTGAGAAGTTTGGAAATCGATTTTATTGGTGATCTTGTAAAGAGATCCGAAGAAG
AAATGTCTAAGTCCAAACACTATAGCGATCAGTGTCTCCAAGAGTTGAAAGTAAAACTTTCTACTTTAGGTCTCTCTTTC
GGAATGAGGGATTTTTAA

Upstream 100 bases:

>100_bases
GTGACTGCATTGCCTGAGCGTCATCATATCGATTTACCGGTGAAAGAACAGGTAATCGTAGAGCTTTACTCTAAATAAAA
TCTGATAGAAGGGTCTCAAA

Downstream 100 bases:

>100_bases
CATGAATAAAAGAAATAAAGTAAAACATTTAAACCGGAATAAAGGTCACAGAGATGCGTTGATCAATAATATGATCACTA
GCCTTTTTAAATATGAGAGA

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha [H]

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSLKSLLKGFKRPKKIEFNTEANTPNYGKFVAEPFERGFATTIGNSLRRTLMSSIEGAAISAIRIEGVNHEFSFIEGVAE
DVTRIILNLKQVRIKYEPEEKDQSKIIHLELKGAGYFRAGDLAVDSSIEIMNPDLHIATLNEDANLVMDLEIQRGRGYVP
AEEKKKDIEVLGTIPVDSIFSPVQKVVFEVSETRVAQRSDYEKLTLEVWTDGSVSPDDAVAQAAKILKEHLTVFINFEEE
LEEEDDELDEADEKLKASLSKHVEELELSVRSLNVLRSLEIDFIGDLVKRSEEEMSKSKHYSDQCLQELKVKLSTLGLSF
GMRDF

Sequences:

>Translated_325_residues
MSLKSLLKGFKRPKKIEFNTEANTPNYGKFVAEPFERGFATTIGNSLRRTLMSSIEGAAISAIRIEGVNHEFSFIEGVAE
DVTRIILNLKQVRIKYEPEEKDQSKIIHLELKGAGYFRAGDLAVDSSIEIMNPDLHIATLNEDANLVMDLEIQRGRGYVP
AEEKKKDIEVLGTIPVDSIFSPVQKVVFEVSETRVAQRSDYEKLTLEVWTDGSVSPDDAVAQAAKILKEHLTVFINFEEE
LEEEDDELDEADEKLKASLSKHVEELELSVRSLNVLRSLEIDFIGDLVKRSEEEMSKSKHYSDQCLQELKVKLSTLGLSF
GMRDF
>Mature_324_residues
SLKSLLKGFKRPKKIEFNTEANTPNYGKFVAEPFERGFATTIGNSLRRTLMSSIEGAAISAIRIEGVNHEFSFIEGVAED
VTRIILNLKQVRIKYEPEEKDQSKIIHLELKGAGYFRAGDLAVDSSIEIMNPDLHIATLNEDANLVMDLEIQRGRGYVPA
EEKKKDIEVLGTIPVDSIFSPVQKVVFEVSETRVAQRSDYEKLTLEVWTDGSVSPDDAVAQAAKILKEHLTVFINFEEEL
EEEDDELDEADEKLKASLSKHVEELELSVRSLNVLRSLEIDFIGDLVKRSEEEMSKSKHYSDQCLQELKVKLSTLGLSFG
MRDF

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family [H]

Homologues:

Organism=Escherichia coli, GI1789690, Length=322, Percent_Identity=38.8198757763975, Blast_Score=222, Evalue=2e-59,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR011260
- InterPro:   IPR011773
- ProDom:   PD001179 [H]

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 36687; Mature: 36556

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKSLLKGFKRPKKIEFNTEANTPNYGKFVAEPFERGFATTIGNSLRRTLMSSIEGAAI
CCHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEE
SAIRIEGVNHEFSFIEGVAEDVTRIILNLKQVRIKYEPEEKDQSKIIHLELKGAGYFRAG
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCCEEEEC
DLAVDSSIEIMNPDLHIATLNEDANLVMDLEIQRGRGYVPAEEKKKDIEVLGTIPVDSIF
CEEECCCCEEECCCEEEEEECCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCHHHHH
SPVQKVVFEVSETRVAQRSDYEKLTLEVWTDGSVSPDDAVAQAAKILKEHLTVFINFEEE
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEHHH
LEEEDDELDEADEKLKASLSKHVEELELSVRSLNVLRSLEIDFIGDLVKRSEEEMSKSKH
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
YSDQCLQELKVKLSTLGLSFGMRDF
CHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLKSLLKGFKRPKKIEFNTEANTPNYGKFVAEPFERGFATTIGNSLRRTLMSSIEGAAI
CHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEE
SAIRIEGVNHEFSFIEGVAEDVTRIILNLKQVRIKYEPEEKDQSKIIHLELKGAGYFRAG
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCCEEEEC
DLAVDSSIEIMNPDLHIATLNEDANLVMDLEIQRGRGYVPAEEKKKDIEVLGTIPVDSIF
CEEECCCCEEECCCEEEEEECCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCHHHHH
SPVQKVVFEVSETRVAQRSDYEKLTLEVWTDGSVSPDDAVAQAAKILKEHLTVFINFEEE
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEHHH
LEEEDDELDEADEKLKASLSKHVEELELSVRSLNVLRSLEIDFIGDLVKRSEEEMSKSKH
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
YSDQCLQELKVKLSTLGLSFGMRDF
CHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA