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The map label for this gene is degS [C]

Identifier: 45658644

GI number: 45658644

Start: 3418620

End: 3419243

Strand: Reverse

Name: degS [C]

Synonym: LIC12813

Alternate gene names: 45658644

Gene position: 3419243-3418620 (Counterclockwise)

Preceding gene: 45658647

Following gene: 45658643

Centisome position: 79.94

GC content: 32.69

Gene sequence:

>624_bases
ATGAATCTATATTTTTCAATTCTGAAACTTTTCGGATTGGTTGTTTATTTAGGATTTTTTTCTTTTGATTGTTCTTCTCA
AATTCAACAAATAAAAACGACCGAAACGGAAATCAAACAGGAAATTTCTTCCGCAGATTTAATCACCCCTCAATCTAAGG
ATAAAATTAGAGTACATCATATTTTTGAAGAAGTTTATCCTACTTCTTCTGCAAGTTCAGTTTCAATTGTTACCGAAAAA
ATTCTGAAGTCTAAATCGTTGTCTTCTAAGGGTGGGCATTTTCTAGAAAAAACTTTTGTGATTTTAGGTTATGGGATTGT
TCTCAATCAGCAAGGTTATATTTTAACGAACTCTCACGTAATTGGAACTTATGATCATCTTCTCGTAAAATCTAAATCCG
GTAAATTTTATGAAGCGATTGTAATTGGTCAGGATAAAAAAAACGATTTAGCGATTTTGCAAGTAACTCCAGACGAAGAT
ATAGTTCCTGTGGAAAAGTTGGACTACTATACTCTTCAAAGAGGAGAGGCGGCGATCCGTAAATATATCCATGCAAAAAA
CCAGATGAAAAAACATCGAGATCCGAAAGTTAAAATGAAAGTTCACCATGGTTCTTCTTTATAA

Upstream 100 bases:

>100_bases
TCCGATTCAATTCTTGACAAAGATGGATTCGTATAAAATCATTCTTATATCTACAGACATTGGATTTTTTAGAAATTAGG
AATCCAATGAAAATTCCTTT

Downstream 100 bases:

>100_bases
TTCTCTCGTTTTTATACTAGGAAAACGGAAACTCTTTTTTAAGCTTACGGTCTAACGATTAAAGACGAAAGAATTCTTCT
CTCTTTCGTCTTAATTAATT

Product: serine protease

Products: NA

Alternate protein names: Serine Protease; Protease Do

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNLYFSILKLFGLVVYLGFFSFDCSSQIQQIKTTETEIKQEISSADLITPQSKDKIRVHHIFEEVYPTSSASSVSIVTEK
ILKSKSLSSKGGHFLEKTFVILGYGIVLNQQGYILTNSHVIGTYDHLLVKSKSGKFYEAIVIGQDKKNDLAILQVTPDED
IVPVEKLDYYTLQRGEAAIRKYIHAKNQMKKHRDPKVKMKVHHGSSL

Sequences:

>Translated_207_residues
MNLYFSILKLFGLVVYLGFFSFDCSSQIQQIKTTETEIKQEISSADLITPQSKDKIRVHHIFEEVYPTSSASSVSIVTEK
ILKSKSLSSKGGHFLEKTFVILGYGIVLNQQGYILTNSHVIGTYDHLLVKSKSGKFYEAIVIGQDKKNDLAILQVTPDED
IVPVEKLDYYTLQRGEAAIRKYIHAKNQMKKHRDPKVKMKVHHGSSL
>Mature_207_residues
MNLYFSILKLFGLVVYLGFFSFDCSSQIQQIKTTETEIKQEISSADLITPQSKDKIRVHHIFEEVYPTSSASSVSIVTEK
ILKSKSLSSKGGHFLEKTFVILGYGIVLNQQGYILTNSHVIGTYDHLLVKSKSGKFYEAIVIGQDKKNDLAILQVTPDED
IVPVEKLDYYTLQRGEAAIRKYIHAKNQMKKHRDPKVKMKVHHGSSL

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.21.- [C]

Molecular weight: Translated: 23437; Mature: 23437

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYFSILKLFGLVVYLGFFSFDCSSQIQQIKTTETEIKQEISSADLITPQSKDKIRVHH
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
IFEEVYPTSSASSVSIVTEKILKSKSLSSKGGHFLEKTFVILGYGIVLNQQGYILTNSHV
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEEEEECCCCEEEECCEE
IGTYDHLLVKSKSGKFYEAIVIGQDKKNDLAILQVTPDEDIVPVEKLDYYTLQRGEAAIR
EECHHEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHCCHHHHHCCHHHHH
KYIHAKNQMKKHRDPKVKMKVHHGSSL
HHHHHHHHHHHCCCCCEEEEECCCCCC
>Mature Secondary Structure
MNLYFSILKLFGLVVYLGFFSFDCSSQIQQIKTTETEIKQEISSADLITPQSKDKIRVHH
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
IFEEVYPTSSASSVSIVTEKILKSKSLSSKGGHFLEKTFVILGYGIVLNQQGYILTNSHV
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEEEEECCCCEEEECCEE
IGTYDHLLVKSKSGKFYEAIVIGQDKKNDLAILQVTPDEDIVPVEKLDYYTLQRGEAAIR
EECHHEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCHHHCCHHHHHCCHHHHH
KYIHAKNQMKKHRDPKVKMKVHHGSSL
HHHHHHHHHHHCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA