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The map label for this gene is ynbC [H]

Identifier: 45658551

GI number: 45658551

Start: 3305680

End: 3306618

Strand: Reverse

Name: ynbC [H]

Synonym: LIC12716

Alternate gene names: 45658551

Gene position: 3306618-3305680 (Counterclockwise)

Preceding gene: 45658557

Following gene: 45658550

Centisome position: 77.31

GC content: 33.65

Gene sequence:

>939_bases
ATGACCTTTCATCATAAAGAATTTCATATTCTATCCAGTTCCGATAAATCTAAATTATATTGTCAATCTTGGACGAAGTC
TAACTCCAATCGATTGTTGATCTTTCATCACGGTTTTGGAGAACATAGTGGACGTTATACGAATTTGATTCGTTATTTTT
CGAAAAGTGATATTAATTTCTATTCTTTTGATATGAGAGGTCATGGAAATTCGGATGGAAAAAGAGGTCATTCGGATTCT
TTTGATTTATATGTAAGGGATCTTGCCGATTTTGTTTCAGAAGTTCTTAAAAGAGAACAAAAGGAACGTTTTTTTCTATT
GGGACATTCTCTGGGAGGAGCGATTACTCTTCGATATTCTCAGGAAGGAATCAATCAGGATAATATTCTAGGTTTGATTC
TTGGTTCTCCTGCGCTTAGGGTAAGAATGGATTTTAGAAAGAAGTTAAAAAAATTTGCTGCTGGTATTTTAAGTAAAATT
TCTCCTTCTTCTGTTGTGGACGCGGAGTTGGATCTTCAATATCTTTCTCATGATCCAGAGGTGATCGAATCTTATAAACA
AGATCCTCTTGTTCACGGTAAAGTTTCCCTAAAAATGGGGACCGAACTTTTGGAGATCGGACCCCAATTGATCAAAAAGG
CGAATGTACTTCGTTGTCCTGTATTGATTTTGCACGGTCAAGAAGATGGACTTGTGGATGTAAATGGTTCTACAGAACTT
TATAAAAATCTAATTTATAGAAATAAAAGAATTAAAATTTACCCCGGTTTTTATCATGAACTGATGAATGAATTTCCAGA
ACATAGGGAAATAGTGTTAAATGATATTCAAACTTTTTTAGAAACCATTCAGAGGGAAAAAATCGATTTTGAGTCTTTAA
AATTACAAAGAAAAGAAGTGGTTTCAAGGAAAAAAAGAAATCCGGTTTCTAATCCTTAA

Upstream 100 bases:

>100_bases
TATAGAATGAAAAAAGTCCCTTTTTAAACGGTTTTATAATATTTAGTTGACCAGTATTGTTTTCATGATTCTTTTCTTCC
AAATAAAATCGGTTTAAGCA

Downstream 100 bases:

>100_bases
CTTTCTGTAATTGGAAGAAATTCTTGATAGTGAATTTTCGAACTCATTGAGTATCATAAATTTATCATAAACCCTGTTTT
AATGTCAGAAATTTGGTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTFHHKEFHILSSSDKSKLYCQSWTKSNSNRLLIFHHGFGEHSGRYTNLIRYFSKSDINFYSFDMRGHGNSDGKRGHSDS
FDLYVRDLADFVSEVLKREQKERFFLLGHSLGGAITLRYSQEGINQDNILGLILGSPALRVRMDFRKKLKKFAAGILSKI
SPSSVVDAELDLQYLSHDPEVIESYKQDPLVHGKVSLKMGTELLEIGPQLIKKANVLRCPVLILHGQEDGLVDVNGSTEL
YKNLIYRNKRIKIYPGFYHELMNEFPEHREIVLNDIQTFLETIQREKIDFESLKLQRKEVVSRKKRNPVSNP

Sequences:

>Translated_312_residues
MTFHHKEFHILSSSDKSKLYCQSWTKSNSNRLLIFHHGFGEHSGRYTNLIRYFSKSDINFYSFDMRGHGNSDGKRGHSDS
FDLYVRDLADFVSEVLKREQKERFFLLGHSLGGAITLRYSQEGINQDNILGLILGSPALRVRMDFRKKLKKFAAGILSKI
SPSSVVDAELDLQYLSHDPEVIESYKQDPLVHGKVSLKMGTELLEIGPQLIKKANVLRCPVLILHGQEDGLVDVNGSTEL
YKNLIYRNKRIKIYPGFYHELMNEFPEHREIVLNDIQTFLETIQREKIDFESLKLQRKEVVSRKKRNPVSNP
>Mature_311_residues
TFHHKEFHILSSSDKSKLYCQSWTKSNSNRLLIFHHGFGEHSGRYTNLIRYFSKSDINFYSFDMRGHGNSDGKRGHSDSF
DLYVRDLADFVSEVLKREQKERFFLLGHSLGGAITLRYSQEGINQDNILGLILGSPALRVRMDFRKKLKKFAAGILSKIS
PSSVVDAELDLQYLSHDPEVIESYKQDPLVHGKVSLKMGTELLEIGPQLIKKANVLRCPVLILHGQEDGLVDVNGSTELY
KNLIYRNKRIKIYPGFYHELMNEFPEHREIVLNDIQTFLETIQREKIDFESLKLQRKEVVSRKKRNPVSNP

Specific function: Unknown

COG id: COG2267

COG function: function code I; Lysophospholipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI51242953, Length=272, Percent_Identity=31.6176470588235, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI6005786, Length=272, Percent_Identity=31.6176470588235, Blast_Score=133, Evalue=2e-31,
Organism=Escherichia coli, GI1787678, Length=290, Percent_Identity=25.8620689655172, Blast_Score=123, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6322756, Length=274, Percent_Identity=28.1021897810219, Blast_Score=96, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022742
- InterPro:   IPR022744 [H]

Pfam domain/function: PF12146 Hydrolase_4; PF12147 Hydrolase_5 [H]

EC number: NA

Molecular weight: Translated: 36057; Mature: 35926

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFHHKEFHILSSSDKSKLYCQSWTKSNSNRLLIFHHGFGEHSGRYTNLIRYFSKSDINF
CCCCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCE
YSFDMRGHGNSDGKRGHSDSFDLYVRDLADFVSEVLKREQKERFFLLGHSLGGAITLRYS
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEC
QEGINQDNILGLILGSPALRVRMDFRKKLKKFAAGILSKISPSSVVDAELDLQYLSHDPE
CCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHH
VIESYKQDPLVHGKVSLKMGTELLEIGPQLIKKANVLRCPVLILHGQEDGLVDVNGSTEL
HHHHHCCCCCEEEEEEHHHCHHHHHHCHHHHHHCCCEECCEEEEECCCCCEEEECCCHHH
YKNLIYRNKRIKIYPGFYHELMNEFPEHREIVLNDIQTFLETIQREKIDFESLKLQRKEV
HHHHHHCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VSRKKRNPVSNP
HHHHHCCCCCCC
>Mature Secondary Structure 
TFHHKEFHILSSSDKSKLYCQSWTKSNSNRLLIFHHGFGEHSGRYTNLIRYFSKSDINF
CCCCCEEEEECCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCE
YSFDMRGHGNSDGKRGHSDSFDLYVRDLADFVSEVLKREQKERFFLLGHSLGGAITLRYS
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEC
QEGINQDNILGLILGSPALRVRMDFRKKLKKFAAGILSKISPSSVVDAELDLQYLSHDPE
CCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHH
VIESYKQDPLVHGKVSLKMGTELLEIGPQLIKKANVLRCPVLILHGQEDGLVDVNGSTEL
HHHHHCCCCCEEEEEEHHHCHHHHHHCHHHHHHCCCEECCEEEEECCCCCEEEECCCHHH
YKNLIYRNKRIKIYPGFYHELMNEFPEHREIVLNDIQTFLETIQREKIDFESLKLQRKEV
HHHHHHCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VSRKKRNPVSNP
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]