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The map label for this gene is rimP

Identifier: 45658542

GI number: 45658542

Start: 3294146

End: 3294634

Strand: Reverse

Name: rimP

Synonym: LIC12707

Alternate gene names: 45658542

Gene position: 3294634-3294146 (Counterclockwise)

Preceding gene: 45658550

Following gene: 45658541

Centisome position: 77.03

GC content: 42.33

Gene sequence:

>489_bases
TTGACAGTAAGCAGTGAAGAAATCAGTGGTATTCTAGATGGCGTTCTGTCTTTGCCTGTCAAACTGTACTCATTAAAGGT
CAACCAAAGGCCTAACCATTCGTTGATCGAAGTAGTCTTGGACAATCTCGAACATCCGTATGGTTCAGTCAGCCTTCTGG
AATGTGAGCAAGTTTCCAGAAAACTGAAAGAAGAGTTAGAACGGATCTCACCGGATCTGGATTATACTCTGAAAGTTTCT
TCTGCAGGAGCAGAAAGGAAACTGAATCTTCCGGGGGACCTGGATCGTTTCCGGGGGATACCGATTCGTTTGGTCTTTCG
ATCGGAAGAATCGGAAAAAGAACAGGAAGGAATTTTTCGAGTCGTGAATCGTGACGGGGATCAGATAGTTTTGGAAAAAT
TCCAAAAGGGAAAAAAATCTGTCGTAAAAAAGCAGACGACACTGAACCTCAAGGATATACTGAAAGGGAATCTTTACGTA
AATATTTGA

Upstream 100 bases:

>100_bases
GCGGGTTTTTTTACTTTACACTATAGCTAAATCTGAATAGTTTGATTAGGTTATCAGGAAAAATTCATTCATTTTTGAGT
TTTCTCTCTAAGGCCGGGGT

Downstream 100 bases:

>100_bases
TATGGCAGTTAAGAAGATACAATCGGAAGGAAATCTGTTGGAAGCGATCCAACAATTTTGTGCGGATAAATCCCTGGATA
GGGAAGCAGTTATGGGAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTVSSEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDYTLKVS
SAGAERKLNLPGDLDRFRGIPIRLVFRSEESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYV
NI

Sequences:

>Translated_162_residues
MTVSSEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDYTLKVS
SAGAERKLNLPGDLDRFRGIPIRLVFRSEESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYV
NI
>Mature_161_residues
TVSSEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISPDLDYTLKVSS
AGAERKLNLPGDLDRFRGIPIRLVFRSEESEKEQEGIFRVVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYVN
I

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_LEPIC (Q72NX1)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_002628.1
- ProteinModelPortal:   Q72NX1
- GeneID:   2772404
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC12707
- HOGENOM:   HBG527811
- ProtClustDB:   PRK14635
- BioCyc:   LINT267671:LIC_12707-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 18362; Mature: 18231

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSSEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSR
CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHH
KLKEELERISPDLDYTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESEKEQEGIFR
HHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHH
VVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYVNI
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEC
>Mature Secondary Structure 
TVSSEEISGILDGVLSLPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSR
CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHH
KLKEELERISPDLDYTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESEKEQEGIFR
HHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHH
VVNRDGDQIVLEKFQKGKKSVVKKQTTLNLKDILKGNLYVNI
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA