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The map label for this gene is yfeS [H]

Identifier: 45658513

GI number: 45658513

Start: 3241479

End: 3242984

Strand: Direct

Name: yfeS [H]

Synonym: LIC12677

Alternate gene names: 45658513

Gene position: 3241479-3242984 (Clockwise)

Preceding gene: 45658512

Following gene: 45658514

Centisome position: 75.79

GC content: 36.79

Gene sequence:

>1506_bases
ATGAACCACAAACTTATATTCAGAGACGACAAATCGGACAAATTCTGGAACATAGAAACTTCCGGAAATTCTTTTACGGT
TACTTATGGTAAAACTGGCACGGCGGGGACTTCTCAAACCAAAACTTTTGAAACCGAAGAAACTTGTATCAAAGAAGCAC
GAAAGCTACTTTCGGAAAAATTAAAAAAAGGTTATATAGAAGGAAACGATAGAACCGAAAAGTTGACTTCTAACAATGAT
AAAAAACACAAATCCAATCAACAAGAAGCGGATAAAATTGTAATTTCTAAATCTGAAGAGAAAACAAAATCTGCTCCACA
AAAAGTTATCGAAGAATCAGAAAACGAAATCAAACAATCGTCCCAAACATCCGCAAATAAAAAAGAAAACTTAAAACAAA
ACTCGCAAACTCAAGAACAAAATTCAAATCCCCTTCCTTCAGAAAATTCTACAGAATTAAATAAAATTAGTCTCTATTAT
CAAGGAGACGGCAGCGATAAAGTTTATCATGTAAATATAGATCCGGAAGGAGACGGTTACGTGGTTCATTTTGCATTCGG
AAGAAGAGGAAGCTCTCTTCAAACCGGAACCAAAACCTCAAAACCAGTATCTTACGAAGCCGCACAAAAAATTATGCGCC
AACTTGTAAATTCCAAGATGGCGAAAGGATACACAGAAATAGAATCCGGTACTCCTTATTTACATTCTACAAAAGAAGAA
CGAGTAAGCGGTGTTCATTGTCAACTACTCAACCCTATCGACGAAGAAGAACTTTCCACGTATGTAGAAGACGACCAATA
CGGAGCCCAAGAAAAATTAGACGGCAATCGTATGATGATTCGTAAAATTGGAGACAACGTAGAAGGAATCAATCGTAAAG
GTTTGATCATCGCAATTTCGCAAATTTTACATGACCACTCTCTGAGTTTTTCAGAAGATTTTATTTTAGACGGAGAAGTG
ATTGGAGACGTTTTTTTTCCTTTCGACATTTTTTCAAAAGACGGTAAAGACATTCAACACCTTCCCTATCAAGAACGTTA
TGCTATACTGGAATCTATTTTAAAAGATCAAGATGAGATCTTTCATATCGTAAAACTAGTCAAGTCTACAAAAGGTAAAA
AAGTTCTGCTCGAAGAATTACGCGAAAAACAAAAAGAAGGAATCGTATTCAAAGATTTGAATGCTCCTTATAAAGCGGGA
CGTCCTTCTAGCAAAGGTTCTCAGATTAAATTTAAATTTTACGAAACCGCAACCGTAAGCGTAGAAACGGTAAATCTAAA
ACGTAGCGTTAGTATGCGTCTCTACAACGGAAACGAATGGGTTTCCGTCGGCAACGTCACCATTCCGGTTAATTTTGCAA
TCCCAAAGGAAAACGACATCATAGAAGTACGTTATTTATACGCCTACAAAGGAGGCTCCTTGTATCAACCTACTTATCTT
GGAGCCCGTACCGATGCGGACGAAAACGACTGTGATCTAAAACAGCTTAAGTATAAAAATGCTTAA

Upstream 100 bases:

>100_bases
ACAATTCAAAACACAAAGGACATATCTTAATTAATTATAAAAATTATTAAATTCAAATATACTAATAAATCCCGATTTCA
AAAAAACCAGGATTAAAAAT

Downstream 100 bases:

>100_bases
GGAAAATATAATAAAACTCGTTCTTGATTTTTATTAGGTGATAACTTTTAGAACCTATTTGATCTATACAAGAAAATTCT
ACATAAATCAATTTATAATT

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MNHKLIFRDDKSDKFWNIETSGNSFTVTYGKTGTAGTSQTKTFETEETCIKEARKLLSEKLKKGYIEGNDRTEKLTSNND
KKHKSNQQEADKIVISKSEEKTKSAPQKVIEESENEIKQSSQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYY
QGDGSDKVYHVNIDPEGDGYVVHFAFGRRGSSLQTGTKTSKPVSYEAAQKIMRQLVNSKMAKGYTEIESGTPYLHSTKEE
RVSGVHCQLLNPIDEEELSTYVEDDQYGAQEKLDGNRMMIRKIGDNVEGINRKGLIIAISQILHDHSLSFSEDFILDGEV
IGDVFFPFDIFSKDGKDIQHLPYQERYAILESILKDQDEIFHIVKLVKSTKGKKVLLEELREKQKEGIVFKDLNAPYKAG
RPSSKGSQIKFKFYETATVSVETVNLKRSVSMRLYNGNEWVSVGNVTIPVNFAIPKENDIIEVRYLYAYKGGSLYQPTYL
GARTDADENDCDLKQLKYKNA

Sequences:

>Translated_501_residues
MNHKLIFRDDKSDKFWNIETSGNSFTVTYGKTGTAGTSQTKTFETEETCIKEARKLLSEKLKKGYIEGNDRTEKLTSNND
KKHKSNQQEADKIVISKSEEKTKSAPQKVIEESENEIKQSSQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYY
QGDGSDKVYHVNIDPEGDGYVVHFAFGRRGSSLQTGTKTSKPVSYEAAQKIMRQLVNSKMAKGYTEIESGTPYLHSTKEE
RVSGVHCQLLNPIDEEELSTYVEDDQYGAQEKLDGNRMMIRKIGDNVEGINRKGLIIAISQILHDHSLSFSEDFILDGEV
IGDVFFPFDIFSKDGKDIQHLPYQERYAILESILKDQDEIFHIVKLVKSTKGKKVLLEELREKQKEGIVFKDLNAPYKAG
RPSSKGSQIKFKFYETATVSVETVNLKRSVSMRLYNGNEWVSVGNVTIPVNFAIPKENDIIEVRYLYAYKGGSLYQPTYL
GARTDADENDCDLKQLKYKNA
>Mature_501_residues
MNHKLIFRDDKSDKFWNIETSGNSFTVTYGKTGTAGTSQTKTFETEETCIKEARKLLSEKLKKGYIEGNDRTEKLTSNND
KKHKSNQQEADKIVISKSEEKTKSAPQKVIEESENEIKQSSQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYY
QGDGSDKVYHVNIDPEGDGYVVHFAFGRRGSSLQTGTKTSKPVSYEAAQKIMRQLVNSKMAKGYTEIESGTPYLHSTKEE
RVSGVHCQLLNPIDEEELSTYVEDDQYGAQEKLDGNRMMIRKIGDNVEGINRKGLIIAISQILHDHSLSFSEDFILDGEV
IGDVFFPFDIFSKDGKDIQHLPYQERYAILESILKDQDEIFHIVKLVKSTKGKKVLLEELREKQKEGIVFKDLNAPYKAG
RPSSKGSQIKFKFYETATVSVETVNLKRSVSMRLYNGNEWVSVGNVTIPVNFAIPKENDIIEVRYLYAYKGGSLYQPTYL
GARTDADENDCDLKQLKYKNA

Specific function: Unknown

COG id: COG3831

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788760, Length=67, Percent_Identity=52.2388059701493, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016835
- InterPro:   IPR008893 [H]

Pfam domain/function: PF05406 WGR [H]

EC number: NA

Molecular weight: Translated: 56786; Mature: 56786

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHKLIFRDDKSDKFWNIETSGNSFTVTYGKTGTAGTSQTKTFETEETCIKEARKLLSEK
CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHH
LKKGYIEGNDRTEKLTSNNDKKHKSNQQEADKIVISKSEEKTKSAPQKVIEESENEIKQS
HHCCCCCCCCCHHHHCCCCCHHHCCCHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHH
SQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYYQGDGSDKVYHVNIDPEGDGY
HHHCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCE
VVHFAFGRRGSSLQTGTKTSKPVSYEAAQKIMRQLVNSKMAKGYTEIESGTPYLHSTKEE
EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
RVSGVHCQLLNPIDEEELSTYVEDDQYGAQEKLDGNRMMIRKIGDNVEGINRKGLIIAIS
HHCCCEEEECCCCCHHHHHHHHCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCEEEHH
QILHDHSLSFSEDFILDGEVIGDVFFPFDIFSKDGKDIQHLPYQERYAILESILKDQDEI
HHHHHCCCCCCCCEEECCHHHHHHHCCHHHHCCCCCCHHCCCHHHHHHHHHHHHCCHHHH
FHIVKLVKSTKGKKVLLEELREKQKEGIVFKDLNAPYKAGRPSSKGSQIKFKFYETATVS
HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEE
VETVNLKRSVSMRLYNGNEWVSVGNVTIPVNFAIPKENDIIEVRYLYAYKGGSLYQPTYL
EEEEEEEEEEEEEEECCCCEEEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCC
GARTDADENDCDLKQLKYKNA
CCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MNHKLIFRDDKSDKFWNIETSGNSFTVTYGKTGTAGTSQTKTFETEETCIKEARKLLSEK
CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEECHHHHHHHHHHHHHHHH
LKKGYIEGNDRTEKLTSNNDKKHKSNQQEADKIVISKSEEKTKSAPQKVIEESENEIKQS
HHCCCCCCCCCHHHHCCCCCHHHCCCHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHH
SQTSANKKENLKQNSQTQEQNSNPLPSENSTELNKISLYYQGDGSDKVYHVNIDPEGDGY
HHHCCCHHHHHHHCCHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCE
VVHFAFGRRGSSLQTGTKTSKPVSYEAAQKIMRQLVNSKMAKGYTEIESGTPYLHSTKEE
EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
RVSGVHCQLLNPIDEEELSTYVEDDQYGAQEKLDGNRMMIRKIGDNVEGINRKGLIIAIS
HHCCCEEEECCCCCHHHHHHHHCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCEEEHH
QILHDHSLSFSEDFILDGEVIGDVFFPFDIFSKDGKDIQHLPYQERYAILESILKDQDEI
HHHHHCCCCCCCCEEECCHHHHHHHCCHHHHCCCCCCHHCCCHHHHHHHHHHHHCCHHHH
FHIVKLVKSTKGKKVLLEELREKQKEGIVFKDLNAPYKAGRPSSKGSQIKFKFYETATVS
HHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEE
VETVNLKRSVSMRLYNGNEWVSVGNVTIPVNFAIPKENDIIEVRYLYAYKGGSLYQPTYL
EEEEEEEEEEEEEEECCCCEEEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCC
GARTDADENDCDLKQLKYKNA
CCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]