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The map label for this gene is nifU [C]

Identifier: 45658475

GI number: 45658475

Start: 3196738

End: 3197529

Strand: Direct

Name: nifU [C]

Synonym: LIC12638

Alternate gene names: 45658475

Gene position: 3196738-3197529 (Clockwise)

Preceding gene: 45658474

Following gene: 45658476

Centisome position: 74.74

GC content: 42.05

Gene sequence:

>792_bases
ATGAGTGTAATGGACTTTGCACGGTACAAACAAATTAACGACGATCGAGTCAACTATCGTGAAATGGAAGACGCGACCGT
CGTTTCTAATTATAGAAACGTTGGTTGTGGAGACGGTTATCGAATTTATCTAAAAATCGATTCTTCAGAAACGGTCACAG
ACGCAAGTTACACCACAACCGGTTGTGGGTTCGGAATTGTAGCTCTTGCGATGGCGACAGAATTTGCAAAAGGAAAAACA
ATCGACCAACTCAAATCGATCACTTCTACGGACATCGAAGGCATGTTCGAATTTCCTGAACGTAGAAAAAATTATCCCGA
ATCCGCAGTCGCAGCCCTACTCCAAGCGGTGCGCGATTACGAAAGCGGAGCTGGCGTTCCCAAAGAAAAAAGAATCACCG
CCGGGAAAGCATTAGAAATTTTAAAAACGAAAGGTTCTCTCAAAGACGAAGACCTTTCCAGTATTATATTAGAGAAACTT
AAACTTGATGGGGTCGATTTTTCAGGCGCCAATCTAGGACACGCATTTCTACAAAATTCTTCTTTTGTAGGAGCCAACTT
CTCCGGAGCCAAACTCAGAGGTTCTTTTTTAAACAACGCAGATCTTAGAAACTCAAATTTTAGAGGAGCCGATCTTCGTT
GGGCAAAATTAGCGGGTGCAAACGTAGAAGGCGCAGATTTTACGGACGCAATCTATGACATTGGAACCCGTCTGGATCAA
AAACAAATTCATCTTTTTTCCGTCATGAAAAAGGAAGGTAAAGATATTTACTTAAACAAAGAGGCGGAATGA

Upstream 100 bases:

>100_bases
GGTCGGGTAGATAAGTTCAAGAAAAAATATAAAATGCAGTGAGAGTTTACAAACTCTTCTTTCTTTTTATGCCGTCTAAA
AACCGGGCAGGAAAACTTTC

Downstream 100 bases:

>100_bases
AACCGGGAGACAAGGTTAAAATCGTAAAACGCACGTTTCTACACAACGGAATTTTCGTTCATACAAATACGATCGTAGAA
GTAATCTCCTTCGAAAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: FeS Cluster Assembly Scaffold Protein NifU; Pentapeptide Repeat Protein; RDD Domain-Containing Protein

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSVMDFARYKQINDDRVNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSETVTDASYTTTGCGFGIVALAMATEFAKGKT
IDQLKSITSTDIEGMFEFPERRKNYPESAVAALLQAVRDYESGAGVPKEKRITAGKALEILKTKGSLKDEDLSSIILEKL
KLDGVDFSGANLGHAFLQNSSFVGANFSGAKLRGSFLNNADLRNSNFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
KQIHLFSVMKKEGKDIYLNKEAE

Sequences:

>Translated_263_residues
MSVMDFARYKQINDDRVNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSETVTDASYTTTGCGFGIVALAMATEFAKGKT
IDQLKSITSTDIEGMFEFPERRKNYPESAVAALLQAVRDYESGAGVPKEKRITAGKALEILKTKGSLKDEDLSSIILEKL
KLDGVDFSGANLGHAFLQNSSFVGANFSGAKLRGSFLNNADLRNSNFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
KQIHLFSVMKKEGKDIYLNKEAE
>Mature_262_residues
SVMDFARYKQINDDRVNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSETVTDASYTTTGCGFGIVALAMATEFAKGKTI
DQLKSITSTDIEGMFEFPERRKNYPESAVAALLQAVRDYESGAGVPKEKRITAGKALEILKTKGSLKDEDLSSIILEKLK
LDGVDFSGANLGHAFLQNSSFVGANFSGAKLRGSFLNNADLRNSNFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQK
QIHLFSVMKKEGKDIYLNKEAE

Specific function: May Be Involved In The Formation Or Repair Of [Fe-S] Clusters Present In Iron-Sulfur Proteins (Potential). [C]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788878, Length=88, Percent_Identity=32.9545454545455, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28970; Mature: 28839

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVMDFARYKQINDDRVNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSETVTDASYTTT
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEECCCCCCC
GCGFGIVALAMATEFAKGKTIDQLKSITSTDIEGMFEFPERRKNYPESAVAALLQAVRDY
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHH
ESGAGVPKEKRITAGKALEILKTKGSLKDEDLSSIILEKLKLDGVDFSGANLGHAFLQNS
HHCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
SFVGANFSGAKLRGSFLNNADLRNSNFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCH
KQIHLFSVMKKEGKDIYLNKEAE
HHHHHHHHHHHCCCEEEEECCCC
>Mature Secondary Structure 
SVMDFARYKQINDDRVNYREMEDATVVSNYRNVGCGDGYRIYLKIDSSETVTDASYTTT
CCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEECCCCCCC
GCGFGIVALAMATEFAKGKTIDQLKSITSTDIEGMFEFPERRKNYPESAVAALLQAVRDY
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHH
ESGAGVPKEKRITAGKALEILKTKGSLKDEDLSSIILEKLKLDGVDFSGANLGHAFLQNS
HHCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
SFVGANFSGAKLRGSFLNNADLRNSNFRGADLRWAKLAGANVEGADFTDAIYDIGTRLDQ
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCH
KQIHLFSVMKKEGKDIYLNKEAE
HHHHHHHHHHHCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA