Click here to switch to the map view.

The map label for this gene is 45658179

Identifier: 45658179

GI number: 45658179

Start: 2816692

End: 2817714

Strand: Direct

Name: 45658179

Synonym: LIC12333

Alternate gene names: NA

Gene position: 2816692-2817714 (Clockwise)

Preceding gene: 45658175

Following gene: 45658180

Centisome position: 65.85

GC content: 35.87

Gene sequence:

>1023_bases
TTGGTCCTAAAGCCTAAGATGAAGACATTCTTTAAGATTCTATTCCTTCTTTTTTTAATACAAACACCAACTTATTCGGA
AGAACTTGATCTTAAAATCCGTATCAAAAATGGAACAACCGGCAAAGAAGGCAACATAGAATCTCTCAGAGTGATTGCAC
TTCAACAAGGTATGATTCCTATTAAAGAAATTGGACCTTCCAATGGTTTTTTCGTCATACCAAAACTTTCCGTCCCGGAT
CAAACTCCAATTCTTCTTCAAGCCAAATATGAGGGTGTAAATTACAACAAGATGGTTCCTCCGGTTCCCGTTCTTCGTTC
TGGAATTCAGGAAATCATAGTCTACGAAAAAACCAAAGATAAATCTTTTTTAAGAACTAGATCGGCGATGCAGATTTCCA
GAGGAAGAGACTTTTTAAGAGTATTTAAGATCTTTCTAATATCTAATAATACGATTCCTCCTAAAAGTTTTCAGGATGAA
CAAAATCCATTTGAAATTTTTGTTCCTTCAGAAGCAACCGAAGTAATGGGGCAATTGACTCAAGGGGATTCCAAAATGCC
GATCCCTCTTTCTTTTCGAGACGGACCCAATGGAAAATTGTTGGATAGAGCAATTCTTCCAGGAAGTTCTGAATTACAAA
TTTCTTATACAATTCCAGCAAGTAATCTTTCCACAGTTACGTTTAAAGATAGAATGCTCACCGAAAAAGAAGAAGGTTTT
AGAGCCATTTTTTCAAAACCGCAGGATATGGAAATTTCCTTTATAGGTGCTTCTAAACAAGAAAGAATTCAAGAAGACGT
ATCTTCCGACATGAAAGCGTTTAAGGTAAGTTATCCTTCTCCTAAATTTGAGGTTTCTATTTCGGTCTCTGGTGGAGCGC
CTATTCTTGATATGGAAACTCAAAGAGTCAATAGAAAGATAGAAAACGGAACCTGGTCTACGGAACGTTCTCTTTTAGGT
TTGGTCGCTATATTAGGATTTCTTTTTACTCTTTCTTTTATCTTTGTTTTTAGAAAAAATTAG

Upstream 100 bases:

>100_bases
ACGAACTTTCTAAACGGAAGATAGATATTTCAAAGAGAATACAACTAAGGAAAAGAAAAGTGGGTGTAAAGGATTTTCTT
TTTGAAAGGGTAAAATTAAA

Downstream 100 bases:

>100_bases
AAAAAACGATCCTATCCGTCTCTACGATCGTTTCGAACAAGTTTATTTTTCTTTGCAAAACTGTTGATCACATATTATAT
GCAATTTTCCTACTTTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MVLKPKMKTFFKILFLLFLIQTPTYSEELDLKIRIKNGTTGKEGNIESLRVIALQQGMIPIKEIGPSNGFFVIPKLSVPD
QTPILLQAKYEGVNYNKMVPPVPVLRSGIQEIIVYEKTKDKSFLRTRSAMQISRGRDFLRVFKIFLISNNTIPPKSFQDE
QNPFEIFVPSEATEVMGQLTQGDSKMPIPLSFRDGPNGKLLDRAILPGSSELQISYTIPASNLSTVTFKDRMLTEKEEGF
RAIFSKPQDMEISFIGASKQERIQEDVSSDMKAFKVSYPSPKFEVSISVSGGAPILDMETQRVNRKIENGTWSTERSLLG
LVAILGFLFTLSFIFVFRKN

Sequences:

>Translated_340_residues
MVLKPKMKTFFKILFLLFLIQTPTYSEELDLKIRIKNGTTGKEGNIESLRVIALQQGMIPIKEIGPSNGFFVIPKLSVPD
QTPILLQAKYEGVNYNKMVPPVPVLRSGIQEIIVYEKTKDKSFLRTRSAMQISRGRDFLRVFKIFLISNNTIPPKSFQDE
QNPFEIFVPSEATEVMGQLTQGDSKMPIPLSFRDGPNGKLLDRAILPGSSELQISYTIPASNLSTVTFKDRMLTEKEEGF
RAIFSKPQDMEISFIGASKQERIQEDVSSDMKAFKVSYPSPKFEVSISVSGGAPILDMETQRVNRKIENGTWSTERSLLG
LVAILGFLFTLSFIFVFRKN
>Mature_340_residues
MVLKPKMKTFFKILFLLFLIQTPTYSEELDLKIRIKNGTTGKEGNIESLRVIALQQGMIPIKEIGPSNGFFVIPKLSVPD
QTPILLQAKYEGVNYNKMVPPVPVLRSGIQEIIVYEKTKDKSFLRTRSAMQISRGRDFLRVFKIFLISNNTIPPKSFQDE
QNPFEIFVPSEATEVMGQLTQGDSKMPIPLSFRDGPNGKLLDRAILPGSSELQISYTIPASNLSTVTFKDRMLTEKEEGF
RAIFSKPQDMEISFIGASKQERIQEDVSSDMKAFKVSYPSPKFEVSISVSGGAPILDMETQRVNRKIENGTWSTERSLLG
LVAILGFLFTLSFIFVFRKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38367; Mature: 38367

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLKPKMKTFFKILFLLFLIQTPTYSEELDLKIRIKNGTTGKEGNIESLRVIALQQGMIP
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEE
IKEIGPSNGFFVIPKLSVPDQTPILLQAKYEGVNYNKMVPPVPVLRSGIQEIIVYEKTKD
HHHCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEECCCC
KSFLRTRSAMQISRGRDFLRVFKIFLISNNTIPPKSFQDEQNPFEIFVPSEATEVMGQLT
HHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH
QGDSKMPIPLSFRDGPNGKLLDRAILPGSSELQISYTIPASNLSTVTFKDRMLTEKEEGF
CCCCCCCCEEEECCCCCCCEEHHEECCCCCCEEEEEEECCCCCEEEEEHHHHHCCHHHHH
RAIFSKPQDMEISFIGASKQERIQEDVSSDMKAFKVSYPSPKFEVSISVSGGAPILDMET
HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCEEECCH
QRVNRKIENGTWSTERSLLGLVAILGFLFTLSFIFVFRKN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MVLKPKMKTFFKILFLLFLIQTPTYSEELDLKIRIKNGTTGKEGNIESLRVIALQQGMIP
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCEE
IKEIGPSNGFFVIPKLSVPDQTPILLQAKYEGVNYNKMVPPVPVLRSGIQEIIVYEKTKD
HHHCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEECCCC
KSFLRTRSAMQISRGRDFLRVFKIFLISNNTIPPKSFQDEQNPFEIFVPSEATEVMGQLT
HHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHH
QGDSKMPIPLSFRDGPNGKLLDRAILPGSSELQISYTIPASNLSTVTFKDRMLTEKEEGF
CCCCCCCCEEEECCCCCCCEEHHEECCCCCCEEEEEEECCCCCEEEEEHHHHHCCHHHHH
RAIFSKPQDMEISFIGASKQERIQEDVSSDMKAFKVSYPSPKFEVSISVSGGAPILDMET
HHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCEEECCH
QRVNRKIENGTWSTERSLLGLVAILGFLFTLSFIFVFRKN
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA