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The map label for this gene is radC [C]

Identifier: 45658145

GI number: 45658145

Start: 2771760

End: 2772458

Strand: Reverse

Name: radC [C]

Synonym: LIC12297

Alternate gene names: 45658145

Gene position: 2772458-2771760 (Counterclockwise)

Preceding gene: 45658146

Following gene: 45658144

Centisome position: 64.82

GC content: 41.49

Gene sequence:

>699_bases
TTGAAGTCTAGCGGAAAACTCTCTGAAAAGTTGAGTCCTTTTCCCGACCCCAGAACACGGATCGCATACGAAGCTGAATC
TCTGGAAGACTGGGAACTTTTAGCGGTACTTTTGGGGAGAGGGAATCGGGCTCAACCAATCGAAGAACTTAGCCGAGAGA
TTTTACACCGAAGTAAAGGATTCGGTGGTCTACTTCAGAAACAAGTTTCGGATCTTCGTAAAATTCCAGGAGTAGGAATT
GCGAAGGCAACTACTTTACTTGCGGCCATAGAAATCGCAAGACGTCTTAAGTGGGAGGCTTTAAAAGGAAAACGTTATTC
TTCCGAACAATTACTTAATTTTCTTGCTACCAGTTTAATTCCTAAAAATAGAGAATGTTTTGTTCTAATTACACTTTCTC
CAGAAGGTGCCGTTTTGCGGGCTGAAGTTGTTGCTGTAGGTAGTTTAGAAGAGGTAGGAGTGCAGACCAGAGACCTTTTA
AAGATCATTTTAAACGATGCGGCCTCTGCCGTAATTATTGCCCACAATCATCCTGAATCCAGTTCTAAACCAAGCAAAGA
AGATCTTTGGATTTATAAAAATTTTGGAAGTTTGTTGGCTAATATCGGCTTGGAGCTTTTAGACCAATGGATTTTTGGAA
TTGACGGGATCTATTCCTGTAAGAAAGGTAAGGTTCTTCAGGCTCGAGCGAAGTGTTAA

Upstream 100 bases:

>100_bases
CGGATTATCTGGAAGAAGCGTTCGAAGGGGAACTCGTTCAAAAAGGGGGCTGGTTTTCAGATTCTCTTTCTGAACTGAGT
AAAAATAATCTGAAGCGGAT

Downstream 100 bases:

>100_bases
AAAATTTACCGATTCTTTGGATTTTAGTAAGGAGGGATTACGCCTTACAATTTGCGGGAAGTGCTCTTGGAATTTCCTGG
ATGCTCGTTCAAAATCTCTC

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHRSKGFGGLLQKQVSDLRKIPGVGI
AKATTLLAAIEIARRLKWEALKGKRYSSEQLLNFLATSLIPKNRECFVLITLSPEGAVLRAEVVAVGSLEEVGVQTRDLL
KIILNDAASAVIIAHNHPESSSKPSKEDLWIYKNFGSLLANIGLELLDQWIFGIDGIYSCKKGKVLQARAKC

Sequences:

>Translated_232_residues
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHRSKGFGGLLQKQVSDLRKIPGVGI
AKATTLLAAIEIARRLKWEALKGKRYSSEQLLNFLATSLIPKNRECFVLITLSPEGAVLRAEVVAVGSLEEVGVQTRDLL
KIILNDAASAVIIAHNHPESSSKPSKEDLWIYKNFGSLLANIGLELLDQWIFGIDGIYSCKKGKVLQARAKC
>Mature_232_residues
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHRSKGFGGLLQKQVSDLRKIPGVGI
AKATTLLAAIEIARRLKWEALKGKRYSSEQLLNFLATSLIPKNRECFVLITLSPEGAVLRAEVVAVGSLEEVGVQTRDLL
KIILNDAASAVIIAHNHPESSSKPSKEDLWIYKNFGSLLANIGLELLDQWIFGIDGIYSCKKGKVLQARAKC

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=200, Percent_Identity=30, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25601; Mature: 25601

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHRSKG
CCCCCCCHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
FGGLLQKQVSDLRKIPGVGIAKATTLLAAIEIARRLKWEALKGKRYSSEQLLNFLATSLI
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
PKNRECFVLITLSPEGAVLRAEVVAVGSLEEVGVQTRDLLKIILNDAASAVIIAHNHPES
CCCCCEEEEEEECCCCCEEEEHHHEECCHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCC
SSKPSKEDLWIYKNFGSLLANIGLELLDQWIFGIDGIYSCKKGKVLQARAKC
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCC
>Mature Secondary Structure
MKSSGKLSEKLSPFPDPRTRIAYEAESLEDWELLAVLLGRGNRAQPIEELSREILHRSKG
CCCCCCCHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
FGGLLQKQVSDLRKIPGVGIAKATTLLAAIEIARRLKWEALKGKRYSSEQLLNFLATSLI
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
PKNRECFVLITLSPEGAVLRAEVVAVGSLEEVGVQTRDLLKIILNDAASAVIIAHNHPES
CCCCCEEEEEEECCCCCEEEEHHHEECCHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCC
SSKPSKEDLWIYKNFGSLLANIGLELLDQWIFGIDGIYSCKKGKVLQARAKC
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA