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The map label for this gene is ycjS [H]

Identifier: 45658005

GI number: 45658005

Start: 2606809

End: 2607837

Strand: Reverse

Name: ycjS [H]

Synonym: LIC12156

Alternate gene names: 45658005

Gene position: 2607837-2606809 (Counterclockwise)

Preceding gene: 45658006

Following gene: 45658004

Centisome position: 60.97

GC content: 37.41

Gene sequence:

>1029_bases
ATGAAGAAGCTTAAAGTTGGTATTACAGGATATGGGGTCGTAGGAAAACGCAGGCACCAATATATCAAACAAAATCCTAA
TTTAATGGTTACTGCAATTTGTGATAAGAGTTTACAGGACGGAAGAAACGCATTAGAGAATTTAAATGTTTATCAAAAAT
TTCAAGATTTAATTCAAAAAGAAGAATTGGATATACTGTTTGTCTGTTTGACCAATGATGTGGCGGCCGAGGCTACGATT
CTTGGCTTAAAAAAAGGACTGCATGTTTTTTGTGAAAAACCACCCGGTAGAAATGTTCAAGAAATAAGTGAAGTTCGTGA
AGTTGAAAGACAATTCCCGTCTCTAAAATTAAAATATGGATTCAATCACAGGTATCATGATTCCATTCGAGAGGCTTTAA
AAATTGTAGCTTCCGGTAAGATGGGAAAAGTCATTAACATTCGAGGAATTTACGGAAAGTCTGCTATTGTAAATGTTGCA
GATGGATGGAGGGCCAACCGTGAAATTGCGGGTGGTGGAATTCTTTTGGACCAAGGAATTCATATGGTGGATTTGATTCG
TCTTTTTGCAGGGGAAATGAGCGAGATCAAAAGTTATGTTTCCAATAGCTATTGGAATTTAGATGTAGAAGACAATGCGT
TTGCTCTGATGAAGTCTGAATCTGGAGTGATTGTTCAGTTTCAATCTACGGCAACCGAATGGCGACATAGATTTAATCTA
CAGATTAATATGGGAGAAGGTAGTCTAGTGCTTTCGGGAATTCTTTCCGGTTCGAAATCGTATGGGCAAGAGACGTTAAC
CATTTATCCTAAGGATTTAGAGTCGGGTGGAAATCCAAGAATGGAAACGATTAATTATTTGGAAGATAATTCCTGGCGAG
ATGAGATCAACGAATTCACGGATCATATCCTAAAAGACGAGTCGATACGAACTGGTTCCAGTTTGGATGCGTATCAAACT
ATGAAACTAGTATATCAAATCTATCATGCAGATCCTGTTTGGAGAGAAAGGTATCAAATTGAATTTTAA

Upstream 100 bases:

>100_bases
CGGAAGGAATTATGATCGGAGTTGACGTCCCAGGAGACGTTTCCAGAGTCGAGTCCGTTTTTAAAACGGACTTGTTGCTA
TCGAAGTATTTATCATAAGT

Downstream 100 bases:

>100_bases
TTTTTTTCATTCATGAATATAAAATCGAAGATACAGTTTTTACGGTTCGCACAAAAAATTGCTTCCGAAGTGGGGCAAAC
ATTGCAAAAAAGAAATCCCT

Product: oxidoreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKKLKVGITGYGVVGKRRHQYIKQNPNLMVTAICDKSLQDGRNALENLNVYQKFQDLIQKEELDILFVCLTNDVAAEATI
LGLKKGLHVFCEKPPGRNVQEISEVREVERQFPSLKLKYGFNHRYHDSIREALKIVASGKMGKVINIRGIYGKSAIVNVA
DGWRANREIAGGGILLDQGIHMVDLIRLFAGEMSEIKSYVSNSYWNLDVEDNAFALMKSESGVIVQFQSTATEWRHRFNL
QINMGEGSLVLSGILSGSKSYGQETLTIYPKDLESGGNPRMETINYLEDNSWRDEINEFTDHILKDESIRTGSSLDAYQT
MKLVYQIYHADPVWRERYQIEF

Sequences:

>Translated_342_residues
MKKLKVGITGYGVVGKRRHQYIKQNPNLMVTAICDKSLQDGRNALENLNVYQKFQDLIQKEELDILFVCLTNDVAAEATI
LGLKKGLHVFCEKPPGRNVQEISEVREVERQFPSLKLKYGFNHRYHDSIREALKIVASGKMGKVINIRGIYGKSAIVNVA
DGWRANREIAGGGILLDQGIHMVDLIRLFAGEMSEIKSYVSNSYWNLDVEDNAFALMKSESGVIVQFQSTATEWRHRFNL
QINMGEGSLVLSGILSGSKSYGQETLTIYPKDLESGGNPRMETINYLEDNSWRDEINEFTDHILKDESIRTGSSLDAYQT
MKLVYQIYHADPVWRERYQIEF
>Mature_342_residues
MKKLKVGITGYGVVGKRRHQYIKQNPNLMVTAICDKSLQDGRNALENLNVYQKFQDLIQKEELDILFVCLTNDVAAEATI
LGLKKGLHVFCEKPPGRNVQEISEVREVERQFPSLKLKYGFNHRYHDSIREALKIVASGKMGKVINIRGIYGKSAIVNVA
DGWRANREIAGGGILLDQGIHMVDLIRLFAGEMSEIKSYVSNSYWNLDVEDNAFALMKSESGVIVQFQSTATEWRHRFNL
QINMGEGSLVLSGILSGSKSYGQETLTIYPKDLESGGNPRMETINYLEDNSWRDEINEFTDHILKDESIRTGSSLDAYQT
MKLVYQIYHADPVWRERYQIEF

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=356, Percent_Identity=24.438202247191, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38938; Mature: 38938

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLKVGITGYGVVGKRRHQYIKQNPNLMVTAICDKSLQDGRNALENLNVYQKFQDLIQK
CCEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHH
EELDILFVCLTNDVAAEATILGLKKGLHVFCEKPPGRNVQEISEVREVERQFPSLKLKYG
CCCCEEEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEC
FNHRYHDSIREALKIVASGKMGKVINIRGIYGKSAIVNVADGWRANREIAGGGILLDQGI
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCCCCEECCCCEEECCCC
HMVDLIRLFAGEMSEIKSYVSNSYWNLDVEDNAFALMKSESGVIVQFQSTATEWRHRFNL
HHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEEECCHHHHHHHEEEE
QINMGEGSLVLSGILSGSKSYGQETLTIYPKDLESGGNPRMETINYLEDNSWRDEINEFT
EEECCCCCEEEHHHHCCCHHCCCCEEEEEEHHHCCCCCCCHHHHHHHCCCCHHHHHHHHH
DHILKDESIRTGSSLDAYQTMKLVYQIYHADPVWRERYQIEF
HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEECC
>Mature Secondary Structure
MKKLKVGITGYGVVGKRRHQYIKQNPNLMVTAICDKSLQDGRNALENLNVYQKFQDLIQK
CCEEEEEEEEECCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHH
EELDILFVCLTNDVAAEATILGLKKGLHVFCEKPPGRNVQEISEVREVERQFPSLKLKYG
CCCCEEEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEC
FNHRYHDSIREALKIVASGKMGKVINIRGIYGKSAIVNVADGWRANREIAGGGILLDQGI
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCCCCEECCCCEEECCCC
HMVDLIRLFAGEMSEIKSYVSNSYWNLDVEDNAFALMKSESGVIVQFQSTATEWRHRFNL
HHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEEECCHHHHHHHEEEE
QINMGEGSLVLSGILSGSKSYGQETLTIYPKDLESGGNPRMETINYLEDNSWRDEINEFT
EEECCCCCEEEHHHHCCCHHCCCCEEEEEEHHHCCCCCCCHHHHHHHCCCCHHHHHHHHH
DHILKDESIRTGSSLDAYQTMKLVYQIYHADPVWRERYQIEF
HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]