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The map label for this gene is rfbF

Identifier: 45657969

GI number: 45657969

Start: 2562832

End: 2563743

Strand: Reverse

Name: rfbF

Synonym: LIC12121

Alternate gene names: 45657969

Gene position: 2563743-2562832 (Counterclockwise)

Preceding gene: 45657970

Following gene: 45657967

Centisome position: 59.94

GC content: 29.17

Gene sequence:

>912_bases
ATGCCAGAGAAATTTTCTCCATTAGCCGTCATTGTTACTTTTAATCCTGATATAAATTTAACTTATAAAAACGTACAAAA
TCTAAATTTAAATTCAGTTCCAGTTTTGATCGTAGATAATCGGTCAAAGAATGTGTCTGCGATTCGTTCTAAAATTAAAA
AACAAAATTTTCTTATAGAGAATGAATCGAATCTGGGTTTGGGGTTTGCCCTAAATAGAGGAATTGAATATGCCCAGTCG
AATTTATATACACACGTTTGGTTGTTTGATCAAGATAGCTTTTTAGAAATTTCGGCGATACGATTATTTCTTCAAAAAAT
TAGAGAATATGAAATTCAAAAATTTCCAAATGAGAAAGTTGCTTCTTATGGTCCTAATATATTTGATACAATCAAAAACC
GTAATATTTATGGAATTCTAAAAGACGAAACCGGAATTTTAAATGCAAAGTTTCTAATAACTTCTGGAAGTTTTTATTCA
TTAGAAGTTTTAAAAGAAGTGGGTTTAATGTATCAAGATTTCTTTATAGACTATTTGGATTACGAGTGGTGCTTTCGGGC
CAATGATAAAGGTTATGTTCATAAAATTATTTCCGATGTAAAAATGAAACATTCTATTGGGAGTGATTCTAGGAGTATAT
TCGGGATTTTTAAAGTTGCAATTCATTCGCCCTTTAGATGGTATTTTCTTTTTAGAAATGGAATTTATATTTGTAAAATG
CCGCATATTCCGTTTCGATTTAAATTAGAAGTTGTTTTAAAAACAATCTTTCGATTTTTGATTTTGCCTATTTTTTCTGA
TTCTAAATATCAAACGTATCTTCATATTCTTTGCGGAATTTGTGATGGGATTACCGGAAGAAAATCTTCTTTTTATAAAC
ATCTTGTAGGTGAAACTTTTTCTACAACTTAA

Upstream 100 bases:

>100_bases
AAAAGATTAGATATTCAGAATATTCAGGGTAATAAATTTAGTAAAACTTTAATGTGGATGAACCGAGGATGGTTTACCCC
GTTTCGTAAAAAATAGTAAT

Downstream 100 bases:

>100_bases
AACAAATCTAAGTTCAAATACTTTTTTGTGAATTTTTAGAAAACTGAAAATGAAATAGAAAAACTGGGTCAGTCATTTTT
GTTACTATTCGGACGCTTGG

Product: dTDP-rhamnosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MPEKFSPLAVIVTFNPDINLTYKNVQNLNLNSVPVLIVDNRSKNVSAIRSKIKKQNFLIENESNLGLGFALNRGIEYAQS
NLYTHVWLFDQDSFLEISAIRLFLQKIREYEIQKFPNEKVASYGPNIFDTIKNRNIYGILKDETGILNAKFLITSGSFYS
LEVLKEVGLMYQDFFIDYLDYEWCFRANDKGYVHKIISDVKMKHSIGSDSRSIFGIFKVAIHSPFRWYFLFRNGIYICKM
PHIPFRFKLEVVLKTIFRFLILPIFSDSKYQTYLHILCGICDGITGRKSSFYKHLVGETFSTT

Sequences:

>Translated_303_residues
MPEKFSPLAVIVTFNPDINLTYKNVQNLNLNSVPVLIVDNRSKNVSAIRSKIKKQNFLIENESNLGLGFALNRGIEYAQS
NLYTHVWLFDQDSFLEISAIRLFLQKIREYEIQKFPNEKVASYGPNIFDTIKNRNIYGILKDETGILNAKFLITSGSFYS
LEVLKEVGLMYQDFFIDYLDYEWCFRANDKGYVHKIISDVKMKHSIGSDSRSIFGIFKVAIHSPFRWYFLFRNGIYICKM
PHIPFRFKLEVVLKTIFRFLILPIFSDSKYQTYLHILCGICDGITGRKSSFYKHLVGETFSTT
>Mature_302_residues
PEKFSPLAVIVTFNPDINLTYKNVQNLNLNSVPVLIVDNRSKNVSAIRSKIKKQNFLIENESNLGLGFALNRGIEYAQSN
LYTHVWLFDQDSFLEISAIRLFLQKIREYEIQKFPNEKVASYGPNIFDTIKNRNIYGILKDETGILNAKFLITSGSFYSL
EVLKEVGLMYQDFFIDYLDYEWCFRANDKGYVHKIISDVKMKHSIGSDSRSIFGIFKVAIHSPFRWYFLFRNGIYICKMP
HIPFRFKLEVVLKTIFRFLILPIFSDSKYQTYLHILCGICDGITGRKSSFYKHLVGETFSTT

Specific function: Unknown

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173
- InterPro:   IPR006446 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 35272; Mature: 35141

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEKFSPLAVIVTFNPDINLTYKNVQNLNLNSVPVLIVDNRSKNVSAIRSKIKKQNFLIE
CCCCCCCEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEE
NESNLGLGFALNRGIEYAQSNLYTHVWLFDQDSFLEISAIRLFLQKIREYEIQKFPNEKV
CCCCCCEEEEECCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
ASYGPNIFDTIKNRNIYGILKDETGILNAKFLITSGSFYSLEVLKEVGLMYQDFFIDYLD
HHCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHCC
YEWCFRANDKGYVHKIISDVKMKHSIGSDSRSIFGIFKVAIHSPFRWYFLFRNGIYICKM
CEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEEEEC
PHIPFRFKLEVVLKTIFRFLILPIFSDSKYQTYLHILCGICDGITGRKSSFYKHLVGETF
CCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
STT
CCC
>Mature Secondary Structure 
PEKFSPLAVIVTFNPDINLTYKNVQNLNLNSVPVLIVDNRSKNVSAIRSKIKKQNFLIE
CCCCCCEEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEE
NESNLGLGFALNRGIEYAQSNLYTHVWLFDQDSFLEISAIRLFLQKIREYEIQKFPNEKV
CCCCCCEEEEECCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
ASYGPNIFDTIKNRNIYGILKDETGILNAKFLITSGSFYSLEVLKEVGLMYQDFFIDYLD
HHCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHCC
YEWCFRANDKGYVHKIISDVKMKHSIGSDSRSIFGIFKVAIHSPFRWYFLFRNGIYICKM
CEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCEEEEEC
PHIPFRFKLEVVLKTIFRFLILPIFSDSKYQTYLHILCGICDGITGRKSSFYKHLVGETF
CCCCCEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
STT
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]