Click here to switch to the map view.

The map label for this gene is 45657899

Identifier: 45657899

GI number: 45657899

Start: 2480537

End: 2481712

Strand: Direct

Name: 45657899

Synonym: LIC12050

Alternate gene names: NA

Gene position: 2480537-2481712 (Clockwise)

Preceding gene: 45657898

Following gene: 45657901

Centisome position: 57.99

GC content: 39.97

Gene sequence:

>1176_bases
GTGGGGTATACTCGCATCAATTCAGGAAATTTTAACCTTTCCTTTAAAATTGAAAACACAGGTTCAGGAAATCTAATTCT
AAGCGGATCTCCTTCCATCACGTTAGGTGGAGACACCAACAACTATGGCATTCTTCAACCTTCAAACTCGATTATCAGTT
CAACGGCTACCTTTTTCAATCTCATTAAAAGATTCTCTAGTGTCGGTCTGAAAACTTCAACGATCTCGATTCCAAACGAC
GATTGCGATGAAAATCCTTATACAATAATGTTTTCTGGAATCGGATTCTCCGATACGAAAGTTGCAGATACTTCTTCTTG
GTCTGCACGAAGAGATCACGTATTGTTAAACTATAATAATACTCTTTGGATATTAGGTGGAAGTTCATCGGGAGTAACAA
AAGACGTTTACTCATCTAACGACGGTTTAACATGGTCTACAAAAACTTTAAATGCAGCTTGGGGTAAAAGAACTAATTTT
TCCGGGGAAGTTTTCAACGGAAAGATGTGGGTCTTAGGAGGATCAGAAGATACTGGATCCTCCGTTTACGTCGGCCGTAA
CGATGTTTGGAATAGCACGGATGGTATTACATGGACACAAGTAACTACGAATGGAGGTTGGGCTGCGAGAACATTCTTTG
CTACTGCCACTTTTAATAATAAAATTTGGATTTTCGGAGGTCGATCTTCGAATGGACCCATGTTAAACGACGTATGGTAT
AGTAGCGATGGAATCACTTGGACACAGGCAACTGCAAATGCAGGATGGGAACCAAGAGATGCACATAAAGTTCTTGTTTA
TAATAATAAACTCTGGCTGATCGGAGGTTTCGGAGGCACAGCCATTGGTAAATATCAAGATGTTTGGTCTAGTCCAGATG
GAGTTACATGGTCAAGAGTTACTTCAAATGCTAATTTCTCAGTCTCAGGTCTCTCCTCACACAATGCTGTCGTTTTTAAT
AACAAGATGTGGGTAATCAACGGATTTAGTAATACCGCTGTTCAAAACTATATTTTTCAATCTTCTGATGGTATCCAATG
GGAAAAAATAACGCCGCTATGGACACCAAGAGATACTTCAGCATCCACTGTCTTCAATGGAAAGATTTGGATGTTAGGTG
GGTTCGATTATAATGCAAATCGACTGAACGACATCTGGACCTTTTGGGATCAGTGA

Upstream 100 bases:

>100_bases
CAATAGTGGATTCGCGTTCAATCTTACGGCATTAGAAACCAATCCTGAAATTAATCTTTCTTTCAATTCAAATACGGTTG
CATCTGGCAATAATCAATAC

Downstream 100 bases:

>100_bases
GAAAATGTCATAGCTGGGCAAGTACAAGACAGTTTCAAAAACTCAGAAGACGGAATATTCAAGTTTTTCTACTAGTGCTG
AAAGCTATTCATTATCTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: PKD Domain Containing Protein; Cell Wall Surface Anchor Family Protein; Ig Domain-Containing Protein

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MGYTRINSGNFNLSFKIENTGSGNLILSGSPSITLGGDTNNYGILQPSNSIISSTATFFNLIKRFSSVGLKTSTISIPND
DCDENPYTIMFSGIGFSDTKVADTSSWSARRDHVLLNYNNTLWILGGSSSGVTKDVYSSNDGLTWSTKTLNAAWGKRTNF
SGEVFNGKMWVLGGSEDTGSSVYVGRNDVWNSTDGITWTQVTTNGGWAARTFFATATFNNKIWIFGGRSSNGPMLNDVWY
SSDGITWTQATANAGWEPRDAHKVLVYNNKLWLIGGFGGTAIGKYQDVWSSPDGVTWSRVTSNANFSVSGLSSHNAVVFN
NKMWVINGFSNTAVQNYIFQSSDGIQWEKITPLWTPRDTSASTVFNGKIWMLGGFDYNANRLNDIWTFWDQ

Sequences:

>Translated_391_residues
MGYTRINSGNFNLSFKIENTGSGNLILSGSPSITLGGDTNNYGILQPSNSIISSTATFFNLIKRFSSVGLKTSTISIPND
DCDENPYTIMFSGIGFSDTKVADTSSWSARRDHVLLNYNNTLWILGGSSSGVTKDVYSSNDGLTWSTKTLNAAWGKRTNF
SGEVFNGKMWVLGGSEDTGSSVYVGRNDVWNSTDGITWTQVTTNGGWAARTFFATATFNNKIWIFGGRSSNGPMLNDVWY
SSDGITWTQATANAGWEPRDAHKVLVYNNKLWLIGGFGGTAIGKYQDVWSSPDGVTWSRVTSNANFSVSGLSSHNAVVFN
NKMWVINGFSNTAVQNYIFQSSDGIQWEKITPLWTPRDTSASTVFNGKIWMLGGFDYNANRLNDIWTFWDQ
>Mature_390_residues
GYTRINSGNFNLSFKIENTGSGNLILSGSPSITLGGDTNNYGILQPSNSIISSTATFFNLIKRFSSVGLKTSTISIPNDD
CDENPYTIMFSGIGFSDTKVADTSSWSARRDHVLLNYNNTLWILGGSSSGVTKDVYSSNDGLTWSTKTLNAAWGKRTNFS
GEVFNGKMWVLGGSEDTGSSVYVGRNDVWNSTDGITWTQVTTNGGWAARTFFATATFNNKIWIFGGRSSNGPMLNDVWYS
SDGITWTQATANAGWEPRDAHKVLVYNNKLWLIGGFGGTAIGKYQDVWSSPDGVTWSRVTSNANFSVSGLSSHNAVVFNN
KMWVINGFSNTAVQNYIFQSSDGIQWEKITPLWTPRDTSASTVFNGKIWMLGGFDYNANRLNDIWTFWDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42963; Mature: 42831

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYTRINSGNFNLSFKIENTGSGNLILSGSPSITLGGDTNNYGILQPSNSIISSTATFFN
CCCEEEECCCEEEEEEEECCCCCCEEEECCCCEEECCCCCCEEEECCCCHHHHHHHHHHH
LIKRFSSVGLKTSTISIPNDDCDENPYTIMFSGIGFSDTKVADTSSWSARRDHVLLNYNN
HHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCEEEEEECC
TLWILGGSSSGVTKDVYSSNDGLTWSTKTLNAAWGKRTNFSGEVFNGKMWVLGGSEDTGS
EEEEEECCCCCCEEHHHCCCCCCEEEEEEEECCCCCCCCCCCEEECCEEEEEECCCCCCC
SVYVGRNDVWNSTDGITWTQVTTNGGWAARTFFATATFNNKIWIFGGRSSNGPMLNDVWY
EEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEE
SSDGITWTQATANAGWEPRDAHKVLVYNNKLWLIGGFGGTAIGKYQDVWSSPDGVTWSRV
CCCCCEEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEE
TSNANFSVSGLSSHNAVVFNNKMWVINGFSNTAVQNYIFQSSDGIQWEKITPLWTPRDTS
ECCCCEEEECCCCCCEEEEECEEEEEECCCCCCEEEEEEECCCCCEEEEECCEECCCCCC
ASTVFNGKIWMLGGFDYNANRLNDIWTFWDQ
CCEEECCEEEEEECCCCCCCCCCEEEEECCC
>Mature Secondary Structure 
GYTRINSGNFNLSFKIENTGSGNLILSGSPSITLGGDTNNYGILQPSNSIISSTATFFN
CCEEEECCCEEEEEEEECCCCCCEEEECCCCEEECCCCCCEEEECCCCHHHHHHHHHHH
LIKRFSSVGLKTSTISIPNDDCDENPYTIMFSGIGFSDTKVADTSSWSARRDHVLLNYNN
HHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCEEEEEECC
TLWILGGSSSGVTKDVYSSNDGLTWSTKTLNAAWGKRTNFSGEVFNGKMWVLGGSEDTGS
EEEEEECCCCCCEEHHHCCCCCCEEEEEEEECCCCCCCCCCCEEECCEEEEEECCCCCCC
SVYVGRNDVWNSTDGITWTQVTTNGGWAARTFFATATFNNKIWIFGGRSSNGPMLNDVWY
EEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEE
SSDGITWTQATANAGWEPRDAHKVLVYNNKLWLIGGFGGTAIGKYQDVWSSPDGVTWSRV
CCCCCEEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEE
TSNANFSVSGLSSHNAVVFNNKMWVINGFSNTAVQNYIFQSSDGIQWEKITPLWTPRDTS
ECCCCEEEECCCCCCEEEEECEEEEEECCCCCCEEEEEEECCCCCEEEEECCEECCCCCC
ASTVFNGKIWMLGGFDYNANRLNDIWTFWDQ
CCEEECCEEEEEECCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA