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The map label for this gene is 45657868

Identifier: 45657868

GI number: 45657868

Start: 2427612

End: 2428019

Strand: Direct

Name: 45657868

Synonym: LIC12016

Alternate gene names: NA

Gene position: 2427612-2428019 (Clockwise)

Preceding gene: 45657867

Following gene: 45657870

Centisome position: 56.76

GC content: 36.27

Gene sequence:

>408_bases
ATGCTTCGAAAAAAAAGAGGCATAAAACAATACGATATGGCAAGAGCGCTCGGGGTTTCTCCAAGCTACCTTTCAAAAAT
TGAAACGGGCAGTCAGGATCCTACCGAAAAATTCAAACAAGCCTGCGTAAAATATTTGAAAACCACTCTTGAAAAATTGT
TTAATGAAGAACCCGTTGAGGATGTTTATCCTGAATTTACGGAAGGACTCACCAACAAACTCTGGGCAAAACGAAGAGAA
TTAGGTATTAAACAATATGATATGGCTAAAAAACTAAAGGTATCCACACCTTTTCTTTCCAAGGTGGAATTGGGACTTTT
AGAACCGCCAGAAGATTTTAAAAACATGGCGTCTAAGGCCTTAAAAATGAAAAAGGAAGAATTGTTTCTTCAAAAAGTTG
AATATTAA

Upstream 100 bases:

>100_bases
GTAATCTTGTTTAAGCTCGTTGGAAATTTTTTCTTGAATTTACATTTCATCAAAATACCTTTGTGTTCGAGAGGGGAATT
GAATGAAAAACCACATATAC

Downstream 100 bases:

>100_bases
AAAATAAGATTACACTCGATAAAAAAGGAAGCTTGTGCTTCCTTTTTTATGTAGATGAAAGGTTTCTATTTCTATTTGGT
TTGGCTTATAGCCCAAACTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVEDVYPEFTEGLTNKLWAKRRE
LGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKALKMKKEELFLQKVEY

Sequences:

>Translated_135_residues
MLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVEDVYPEFTEGLTNKLWAKRRE
LGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKALKMKKEELFLQKVEY
>Mature_135_residues
MLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVEDVYPEFTEGLTNKLWAKRRE
LGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKALKMKKEELFLQKVEY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15716; Mature: 15716

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVE
CCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
DVYPEFTEGLTNKLWAKRRELGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH
LKMKKEELFLQKVEY
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRKKRGIKQYDMARALGVSPSYLSKIETGSQDPTEKFKQACVKYLKTTLEKLFNEEPVE
CCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
DVYPEFTEGLTNKLWAKRRELGIKQYDMAKKLKVSTPFLSKVELGLLEPPEDFKNMASKA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH
LKMKKEELFLQKVEY
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA