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The map label for this gene is yadE [H]

Identifier: 45657770

GI number: 45657770

Start: 2305758

End: 2306660

Strand: Direct

Name: yadE [H]

Synonym: LIC11910

Alternate gene names: 45657770

Gene position: 2305758-2306660 (Clockwise)

Preceding gene: 45657769

Following gene: 45657771

Centisome position: 53.91

GC content: 35.77

Gene sequence:

>903_bases
TTGGAATTTCTTTTTAATAAAATATTCAAGAATCAGAATTTTTGGATCGGAATTTTATTTTTTTCATTGAACGTTTGCGG
TTCGTTCTCTCGAGAATCGCAAACCACTTCCTCAAAACAAAAAACAAATCAAAATGGTATTCCCGTTTTAATTTATCATG
AAATTGTAATTCATTCTGCAAAAGAACCAGGAGAAACTGTAATCACATTAGAAAAATTTGAAGAACAAATGCAGTATCTT
TTTTCTCAAGGGTATAACCCAATTACCATGAGAGATCTTCTACTTTATATTGAAAAAGGAAAAGTTTTACCTGATAAATC
TATAGTTTTAAATTTTGACGACGGCTGGAAAAACGTTTTAAACGCGGTTCCAGTGCTCAATCGATATTCCTTTCCGGCTT
CTTTTTGGATCATAGCCGGACCGAAAGGAATCGGTAACGGAGAATATTTAGAATGGTCCGATATTCAAGAACTTGCCAAA
AATCCAAAATTCGAGATAGGGTCTCACACATACAGCCATCCCTGGAACCCAAAAGATAACTTGGTAACCTGGGTGGATAA
TCGTGTTCCTGGAAAGAGTGCAAAAGATGCGCTCTTTGAACTAAAAGAATCTAAAAAAATCCTAGAATCCAAATTAGGTA
TTTCCGTAGATTATCTAGCTTGGCCCTGCGGTTGGTACAATGATAAACTTATCCAACTAGCACAACAATCAGGTTATAAA
TCAATACTCACAACCGAAGACGGAACGAATCTACCAGGAGAAAATCCATTCAAAATCAAGCGAGTTTTTATAGATGGGAA
ATGCAGCCTAACGTCATTTATCGAACAATTGAAAAATCCTAGATATATCGTCTGTCAGAAATCCCAAAAACCTACACGAG
GAAACTCTCCCTATTCGGATTAA

Upstream 100 bases:

>100_bases
CCGCCTATTCAATTCTCCGTCATAATGGCGTAGATATAGGAAAGAAAAACTACCTAGGTGAAATGCCTTTTAAAAGTTAA
AATAATCGACGACGAATTTT

Downstream 100 bases:

>100_bases
AATTTTCACGGATTTTTTACTAAAAATTCATTTTCATCTGGAAATATTGAACCGTTTTGCAAGATCTACTTTCCAACTAA
GGCAAAATAGTTTATCAACG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MEFLFNKIFKNQNFWIGILFFSLNVCGSFSRESQTTSSKQKTNQNGIPVLIYHEIVIHSAKEPGETVITLEKFEEQMQYL
FSQGYNPITMRDLLLYIEKGKVLPDKSIVLNFDDGWKNVLNAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAK
NPKFEIGSHTYSHPWNPKDNLVTWVDNRVPGKSAKDALFELKESKKILESKLGISVDYLAWPCGWYNDKLIQLAQQSGYK
SILTTEDGTNLPGENPFKIKRVFIDGKCSLTSFIEQLKNPRYIVCQKSQKPTRGNSPYSD

Sequences:

>Translated_300_residues
MEFLFNKIFKNQNFWIGILFFSLNVCGSFSRESQTTSSKQKTNQNGIPVLIYHEIVIHSAKEPGETVITLEKFEEQMQYL
FSQGYNPITMRDLLLYIEKGKVLPDKSIVLNFDDGWKNVLNAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAK
NPKFEIGSHTYSHPWNPKDNLVTWVDNRVPGKSAKDALFELKESKKILESKLGISVDYLAWPCGWYNDKLIQLAQQSGYK
SILTTEDGTNLPGENPFKIKRVFIDGKCSLTSFIEQLKNPRYIVCQKSQKPTRGNSPYSD
>Mature_300_residues
MEFLFNKIFKNQNFWIGILFFSLNVCGSFSRESQTTSSKQKTNQNGIPVLIYHEIVIHSAKEPGETVITLEKFEEQMQYL
FSQGYNPITMRDLLLYIEKGKVLPDKSIVLNFDDGWKNVLNAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAK
NPKFEIGSHTYSHPWNPKDNLVTWVDNRVPGKSAKDALFELKESKKILESKLGISVDYLAWPCGWYNDKLIQLAQQSGYK
SILTTEDGTNLPGENPFKIKRVFIDGKCSLTSFIEQLKNPRYIVCQKSQKPTRGNSPYSD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=253, Percent_Identity=28.4584980237154, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787260, Length=319, Percent_Identity=23.8244514106583, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 34326; Mature: 34326

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLFNKIFKNQNFWIGILFFSLNVCGSFSRESQTTSSKQKTNQNGIPVLIYHEIVIHSA
CHHHHHHHHCCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEHCCC
KEPGETVITLEKFEEQMQYLFSQGYNPITMRDLLLYIEKGKVLPDKSIVLNFDDGWKNVL
CCCCCEEEEHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
NAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPKFEIGSHTYSHPWNPKDN
HHHHHHHCCCCCCEEEEEECCCCCCCCCEECHHHHHHHHCCCCEEECCCCCCCCCCCCCC
LVTWVDNRVPGKSAKDALFELKESKKILESKLGISVDYLAWPCGWYNDKLIQLAQQSGYK
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCCC
SILTTEDGTNLPGENPFKIKRVFIDGKCSLTSFIEQLKNPRYIVCQKSQKPTRGNSPYSD
EEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MEFLFNKIFKNQNFWIGILFFSLNVCGSFSRESQTTSSKQKTNQNGIPVLIYHEIVIHSA
CHHHHHHHHCCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEHCCC
KEPGETVITLEKFEEQMQYLFSQGYNPITMRDLLLYIEKGKVLPDKSIVLNFDDGWKNVL
CCCCCEEEEHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
NAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPKFEIGSHTYSHPWNPKDN
HHHHHHHCCCCCCEEEEEECCCCCCCCCEECHHHHHHHHCCCCEEECCCCCCCCCCCCCC
LVTWVDNRVPGKSAKDALFELKESKKILESKLGISVDYLAWPCGWYNDKLIQLAQQSGYK
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHCCCC
SILTTEDGTNLPGENPFKIKRVFIDGKCSLTSFIEQLKNPRYIVCQKSQKPTRGNSPYSD
EEEECCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]