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The map label for this gene is yrbE [C]

Identifier: 45657720

GI number: 45657720

Start: 2252519

End: 2253298

Strand: Direct

Name: yrbE [C]

Synonym: LIC11857

Alternate gene names: 45657720

Gene position: 2252519-2253298 (Clockwise)

Preceding gene: 45657719

Following gene: 45657721

Centisome position: 52.66

GC content: 39.36

Gene sequence:

>780_bases
ATGACAGGACCTATCAAAGAAAAACTTACCGAATTTTTCTACGCTAGTGGTTTTACAATTCTTTTAGTATATGAGAGTAT
TCTAAACCTTCCTTATAGTTTTTTCAAAAGAAAGGAAATTTTAGATCAGATGTATATTACAGGAGTCGGAAGTATCTCTG
TGGTTTCGATAGTCGCCGTTTTTACTGGAATGATCATGTCGCTTAACACCGGACTGGGACTCAAAGACTTCGGCGCAGAA
GGTCAAATCGGTCTTTTGATGACAATTACTTTGACCAGAGAAATGTCTCCTTTTATGACCGCGTTGATTCTTGCTGCTTC
GATCGGTTCCGCCATGGCCGCGGAAATTGGAACGATGAAAGTTTCCGAAGAAGTGGACGCACTCGAAGTGATGTCCATCG
ATCCGGTGCGTTATTTGATCTTTCCTAGGATTTTAGGATTTTCGGTCATGGTACCTGTGTTATGCGTTTATTCTACTGCT
CTTGGAATTTTAGGAGGAGCGATCGTAGGTTATTTTCAACTTGGAATCGACTATTTTACTTATTTTAGAGACGTGTTTGA
TAGAATCGCTTCGATTCCGGGCTTAAAAGATTTATATGTAGGAATTCTAAAAGGTTTTATATTTGGAATCATCGTATCTG
CGATTTCTTGTTCGCACGGACTTAGAACATCCGGAGGAGCAATTGGAGTCGGTCGAGCCACAAGAGAATCTGTAGTTGCT
TCATTTTTGATGGTGATCTTTACAGGTTATATGATTACTGCATTATTCTATAGAGATTAA

Upstream 100 bases:

>100_bases
TTACTCCCGAAAAAACTTCCTGGAAATTCCTTTACGGTCTTATCGGCTATGAAAGAATCGAAACCAACCGGAATCTTCAA
ATACTCTGGTTTATCAAGAT

Downstream 100 bases:

>100_bases
ACCATGGAACCGTTTGCAATCGAACTTAAAAACGTACATAAAACTTTCGGCAAAAGAAAGATTTTAGCGGGAATGGATCT
TCATGTAAAAAAAGGAGAAA

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTGPIKEKLTEFFYASGFTILLVYESILNLPYSFFKRKEILDQMYITGVGSISVVSIVAVFTGMIMSLNTGLGLKDFGAE
GQIGLLMTITLTREMSPFMTALILAASIGSAMAAEIGTMKVSEEVDALEVMSIDPVRYLIFPRILGFSVMVPVLCVYSTA
LGILGGAIVGYFQLGIDYFTYFRDVFDRIASIPGLKDLYVGILKGFIFGIIVSAISCSHGLRTSGGAIGVGRATRESVVA
SFLMVIFTGYMITALFYRD

Sequences:

>Translated_259_residues
MTGPIKEKLTEFFYASGFTILLVYESILNLPYSFFKRKEILDQMYITGVGSISVVSIVAVFTGMIMSLNTGLGLKDFGAE
GQIGLLMTITLTREMSPFMTALILAASIGSAMAAEIGTMKVSEEVDALEVMSIDPVRYLIFPRILGFSVMVPVLCVYSTA
LGILGGAIVGYFQLGIDYFTYFRDVFDRIASIPGLKDLYVGILKGFIFGIIVSAISCSHGLRTSGGAIGVGRATRESVVA
SFLMVIFTGYMITALFYRD
>Mature_258_residues
TGPIKEKLTEFFYASGFTILLVYESILNLPYSFFKRKEILDQMYITGVGSISVVSIVAVFTGMIMSLNTGLGLKDFGAEG
QIGLLMTITLTREMSPFMTALILAASIGSAMAAEIGTMKVSEEVDALEVMSIDPVRYLIFPRILGFSVMVPVLCVYSTAL
GILGGAIVGYFQLGIDYFTYFRDVFDRIASIPGLKDLYVGILKGFIFGIIVSAISCSHGLRTSGGAIGVGRATRESVVAS
FLMVIFTGYMITALFYRD

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=243, Percent_Identity=32.9218106995885, Blast_Score=128, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 28100; Mature: 27969

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPIKEKLTEFFYASGFTILLVYESILNLPYSFFKRKEILDQMYITGVGSISVVSIVAV
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FTGMIMSLNTGLGLKDFGAEGQIGLLMTITLTREMSPFMTALILAASIGSAMAAEIGTMK
HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSEEVDALEVMSIDPVRYLIFPRILGFSVMVPVLCVYSTALGILGGAIVGYFQLGIDYFT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFRDVFDRIASIPGLKDLYVGILKGFIFGIIVSAISCSHGLRTSGGAIGVGRATRESVVA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHH
SFLMVIFTGYMITALFYRD
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGPIKEKLTEFFYASGFTILLVYESILNLPYSFFKRKEILDQMYITGVGSISVVSIVAV
CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FTGMIMSLNTGLGLKDFGAEGQIGLLMTITLTREMSPFMTALILAASIGSAMAAEIGTMK
HHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSEEVDALEVMSIDPVRYLIFPRILGFSVMVPVLCVYSTALGILGGAIVGYFQLGIDYFT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YFRDVFDRIASIPGLKDLYVGILKGFIFGIIVSAISCSHGLRTSGGAIGVGRATRESVVA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHH
SFLMVIFTGYMITALFYRD
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA