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The map label for this gene is rfaQ

Identifier: 45657617

GI number: 45657617

Start: 2137927

End: 2138988

Strand: Direct

Name: rfaQ

Synonym: LIC11751

Alternate gene names: 45657617

Gene position: 2137927-2138988 (Clockwise)

Preceding gene: 45657616

Following gene: 45657619

Centisome position: 49.98

GC content: 37.48

Gene sequence:

>1062_bases
ATGAATTTATTAGTCATGAGGTTTTCTGCCATGGGGGACGTCGCTCTTATGGCACCTGCAATCATAGCAATCGCGGCAAA
ATATACAAATATCCAACTTACTATTGTTACACGAGGAAATTACGCTCCTTTCTTTTATAATATTCCAAATGTAAACGTAG
TTGGTTTTAATTTAAAACGGTATCGGGGAATTTTAGGTCTTTATAGACTTTTCCTGGAAATCAATAAGTTAGGCCCTTAC
GAAAAAGTAATCGATCTTCATTCTTCCGTTCGTTCCAGATTGATCAGCCTTCTTTTTTCCATTCGCGGAATTGGAGTATT
TCGGATCGTAAAAGGAAGAAAAGAAAAACTCAGACAAATTCGTCAGAAGAAAAAAATCCTTACTCCCCTTCCTCATACAG
TAGACCGTTATCTCAAAGTTTTTGAACACGCTGGTTACCCCGCTTCTGCAAGAAAAGGTCCTTGGATCAACGTAGATCCA
GAATCCAAAATATTCGCAAAGGAATTTTTCGAATCTCAGAATATTCAAAAAAAAGAAAGTCTTTGGATTGGCTTTGCTCC
GTTTGCAGGCCACGCCCTAAAAGAATGGTCTAGGGAAAAAAGTAAAACTCTACTTAAACTTCTTTTAGATGAATTTACTG
GGGTCAAAATTTTTCTTTTTGGTTCTAAAGAAGAATCTAAAATTCTTTCGCAGTGGGGACAAGGTCTTGAGGAATCCGTT
AAAATAGTTTCTGGAGGTAAGTTGGGAATCCGAGGTGAATTAGGAATTATGGAAAGAATGGACGTAATAATAGGTATGGA
TTCGTCTAACGTTCATATAGCGGCGCTTCTCAAAAGACCCGTGATCGGAATTTATGGAACCACACATCCCTATTCCGGTT
TTGCTCCTTTTGGTCAAGAAGATTCAGGAGTATTACAAATAGATCATTTACCTTGTAGACCTTGTAGTATCTACGGAAAC
ACCACTTGTTACCGAAAAGATTTTGCTTGTATGGAATGGATTCAGCCCGAAGATGTAATTAAAAGAATCCGAGTCGTTTA
TAACATAAACACTTTGTTTTAA

Upstream 100 bases:

>100_bases
TGGAAGATTTAAAAAACGGTGATAAATTCTATAAAGTTTATCGTCAGATGAAAATGTATAACGATCAAAATTTGAATCCT
TCTCTTTATTCTAAAAAATC

Downstream 100 bases:

>100_bases
TAGATCTGAATTTTTTACACGCTCTGTTTTTAGCGTAAATTCACTGTTAAAAGATTTGTTTTATAAAACCTGATTTTTCT
GTAAAAATAAAATGTAGTAA

Product: lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKRYRGILGLYRLFLEINKLGPY
EKVIDLHSSVRSRLISLLFSIRGIGVFRIVKGRKEKLRQIRQKKKILTPLPHTVDRYLKVFEHAGYPASARKGPWINVDP
ESKIFAKEFFESQNIQKKESLWIGFAPFAGHALKEWSREKSKTLLKLLLDEFTGVKIFLFGSKEESKILSQWGQGLEESV
KIVSGGKLGIRGELGIMERMDVIIGMDSSNVHIAALLKRPVIGIYGTTHPYSGFAPFGQEDSGVLQIDHLPCRPCSIYGN
TTCYRKDFACMEWIQPEDVIKRIRVVYNINTLF

Sequences:

>Translated_353_residues
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKRYRGILGLYRLFLEINKLGPY
EKVIDLHSSVRSRLISLLFSIRGIGVFRIVKGRKEKLRQIRQKKKILTPLPHTVDRYLKVFEHAGYPASARKGPWINVDP
ESKIFAKEFFESQNIQKKESLWIGFAPFAGHALKEWSREKSKTLLKLLLDEFTGVKIFLFGSKEESKILSQWGQGLEESV
KIVSGGKLGIRGELGIMERMDVIIGMDSSNVHIAALLKRPVIGIYGTTHPYSGFAPFGQEDSGVLQIDHLPCRPCSIYGN
TTCYRKDFACMEWIQPEDVIKRIRVVYNINTLF
>Mature_353_residues
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKRYRGILGLYRLFLEINKLGPY
EKVIDLHSSVRSRLISLLFSIRGIGVFRIVKGRKEKLRQIRQKKKILTPLPHTVDRYLKVFEHAGYPASARKGPWINVDP
ESKIFAKEFFESQNIQKKESLWIGFAPFAGHALKEWSREKSKTLLKLLLDEFTGVKIFLFGSKEESKILSQWGQGLEESV
KIVSGGKLGIRGELGIMERMDVIIGMDSSNVHIAALLKRPVIGIYGTTHPYSGFAPFGQEDSGVLQIDHLPCRPCSIYGN
TTCYRKDFACMEWIQPEDVIKRIRVVYNINTLF

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40078; Mature: 40078

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKR
CCEEEEEECCCCCHHHHHHHHHHHHEEECEEEEEEEECCCCCCEEEECCCCEEEECCHHH
YRGILGLYRLFLEINKLGPYEKVIDLHSSVRSRLISLLFSIRGIGVFRIVKGRKEKLRQI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH
RQKKKILTPLPHTVDRYLKVFEHAGYPASARKGPWINVDPESKIFAKEFFESQNIQKKES
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCHHC
LWIGFAPFAGHALKEWSREKSKTLLKLLLDEFTGVKIFLFGSKEESKILSQWGQGLEESV
EEEEECHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHHH
KIVSGGKLGIRGELGIMERMDVIIGMDSSNVHIAALLKRPVIGIYGTTHPYSGFAPFGQE
EEEECCCEEECCCCCHHHHCEEEEECCCCCEEEEEEHHCCCEEEEECCCCCCCCCCCCCC
DSGVLQIDHLPCRPCSIYGNTTCYRKDFACMEWIQPEDVIKRIRVVYNINTLF
CCCEEEECCCCCCCEEECCCCEEEECCHHHHHCCCHHHHHHHHHHHHEEHCCC
>Mature Secondary Structure
MNLLVMRFSAMGDVALMAPAIIAIAAKYTNIQLTIVTRGNYAPFFYNIPNVNVVGFNLKR
CCEEEEEECCCCCHHHHHHHHHHHHEEECEEEEEEEECCCCCCEEEECCCCEEEECCHHH
YRGILGLYRLFLEINKLGPYEKVIDLHSSVRSRLISLLFSIRGIGVFRIVKGRKEKLRQI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHH
RQKKKILTPLPHTVDRYLKVFEHAGYPASARKGPWINVDPESKIFAKEFFESQNIQKKES
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCHHC
LWIGFAPFAGHALKEWSREKSKTLLKLLLDEFTGVKIFLFGSKEESKILSQWGQGLEESV
EEEEECHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHHH
KIVSGGKLGIRGELGIMERMDVIIGMDSSNVHIAALLKRPVIGIYGTTHPYSGFAPFGQE
EEEECCCEEECCCCCHHHHCEEEEECCCCCEEEEEEHHCCCEEEEECCCCCCCCCCCCCC
DSGVLQIDHLPCRPCSIYGNTTCYRKDFACMEWIQPEDVIKRIRVVYNINTLF
CCCEEEECCCCCCCEEECCCCEEEECCHHHHHCCCHHHHHHHHHHHHEEHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]