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The map label for this gene is dedA [C]

Identifier: 45657532

GI number: 45657532

Start: 2025207

End: 2025812

Strand: Reverse

Name: dedA [C]

Synonym: LIC11662

Alternate gene names: 45657532

Gene position: 2025812-2025207 (Counterclockwise)

Preceding gene: 45657534

Following gene: 45657531

Centisome position: 47.36

GC content: 37.95

Gene sequence:

>606_bases
ATGGAATTTTTAAATATTCTTGTGAATGTATTTTCCGAATACGGTTATATTGCCGTCTTTTTGGTTTTAATTTTTTGTGG
ATTTGGACTCCCCGTTCCAGAAGATATTTCTCTGGTTTCCGGAGGGGTCATCGCAGGACTCGGAAAAGCAGATCCACATT
TTATGTTTTTAGTTGGAATGGCAGGAGTACTCATTGGAGACAGTTCCGTTTTTTTGATTGGTAGAATTTATGGGGTTCGT
GTACTTCAAATCCCAATGATTTCTAGAATTGTTACACCGGAAAGATTTGCCAAAGTCCAAGATAAAATTTCTCGCTATGG
AAACTGGGTTACATTTATGGCACGTTTTATGCCAGGTCTCAGAATGCCTATTTATCTCACTGCAGGTACCTCCGACCGAA
TTTCATTTTACCGTTTTGTAATTTTAGATTTTCTTGCAGCAATTATTTCTGTTCCGGTTTGGGTTTATCTTGGATATTTC
GGAGCTTATAACTTCGATAAGCTCATGGACTGGGTTCACAACGGACAACTTTTCGTATTTGGACTTTTAGGAACTGCTTT
TTTGTTGTTTGGAATCGTTTATTGGATTCGCAAGAAACGTTCCTAA

Upstream 100 bases:

>100_bases
TCTGAAAAGTCCCTCCACTTTTTTTGTTTGTTTACTGCTATTTTACCCTCATTCCATTTTATTGACTTTGGAATCCTAAA
AAATAGGATCTGCTCAGAAG

Downstream 100 bases:

>100_bases
ACTCGAGAATTTCTTTACATCTTCCAAGCGCAGATTATTGTTTGACCAGTTATGGACATTCTTGCGCAGCCGGTGCTTGT
GCTGAATGCCGGTTACGTCC

Product: cytoplasmic membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MEFLNILVNVFSEYGYIAVFLVLIFCGFGLPVPEDISLVSGGVIAGLGKADPHFMFLVGMAGVLIGDSSVFLIGRIYGVR
VLQIPMISRIVTPERFAKVQDKISRYGNWVTFMARFMPGLRMPIYLTAGTSDRISFYRFVILDFLAAIISVPVWVYLGYF
GAYNFDKLMDWVHNGQLFVFGLLGTAFLLFGIVYWIRKKRS

Sequences:

>Translated_201_residues
MEFLNILVNVFSEYGYIAVFLVLIFCGFGLPVPEDISLVSGGVIAGLGKADPHFMFLVGMAGVLIGDSSVFLIGRIYGVR
VLQIPMISRIVTPERFAKVQDKISRYGNWVTFMARFMPGLRMPIYLTAGTSDRISFYRFVILDFLAAIISVPVWVYLGYF
GAYNFDKLMDWVHNGQLFVFGLLGTAFLLFGIVYWIRKKRS
>Mature_201_residues
MEFLNILVNVFSEYGYIAVFLVLIFCGFGLPVPEDISLVSGGVIAGLGKADPHFMFLVGMAGVLIGDSSVFLIGRIYGVR
VLQIPMISRIVTPERFAKVQDKISRYGNWVTFMARFMPGLRMPIYLTAGTSDRISFYRFVILDFLAAIISVPVWVYLGYF
GAYNFDKLMDWVHNGQLFVFGLLGTAFLLFGIVYWIRKKRS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22685; Mature: 22685

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLNILVNVFSEYGYIAVFLVLIFCGFGLPVPEDISLVSGGVIAGLGKADPHFMFLVGM
CHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHCCCCCCCCHHHHHHHH
AGVLIGDSSVFLIGRIYGVRVLQIPMISRIVTPERFAKVQDKISRYGNWVTFMARFMPGL
HHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCC
RMPIYLTAGTSDRISFYRFVILDFLAAIISVPVWVYLGYFGAYNFDKLMDWVHNGQLFVF
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEH
GLLGTAFLLFGIVYWIRKKRS
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEFLNILVNVFSEYGYIAVFLVLIFCGFGLPVPEDISLVSGGVIAGLGKADPHFMFLVGM
CHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHCCCCCCCCHHHHHHHH
AGVLIGDSSVFLIGRIYGVRVLQIPMISRIVTPERFAKVQDKISRYGNWVTFMARFMPGL
HHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCC
RMPIYLTAGTSDRISFYRFVILDFLAAIISVPVWVYLGYFGAYNFDKLMDWVHNGQLFVF
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEH
GLLGTAFLLFGIVYWIRKKRS
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]