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The map label for this gene is 45657342

Identifier: 45657342

GI number: 45657342

Start: 1811649

End: 1813145

Strand: Reverse

Name: 45657342

Synonym: LIC11467

Alternate gene names: NA

Gene position: 1813145-1811649 (Counterclockwise)

Preceding gene: 45657345

Following gene: 45657341

Centisome position: 42.39

GC content: 41.42

Gene sequence:

>1497_bases
TTGCATTCATTTTATATACCATTTGGTTCATCTCTTGTAGTCCTCAATCTCGAACCGATATTGCCCCTTTGCTTTTGGCC
GCACTCTCTCAGACAACCGGGTCCCAAAACGAAAGTTCTTTCCCCTCGAGAAGGAGAAATCCTTACGGTCTATCAATTAG
AAACAACAGTTCAAGCAAACTCGGACGGAGAATTCGAAATCTTCCATGAAGGAAATAAATTATTTTCATTTCAATCCACC
CCATCTTCTCCCCAAACATCCCCTACCTTTAAACCTAAAAACGGGCACAATACGATCCAAATTCGTTTCAAAAAATCAAA
TGGTTTCGTTCTATCTCAAGAAATCCATTTCTACTTCGGAACCAAACTGAGCGCAGGCGGAGCACATTCTGGTTTTCTAA
TAAACGGAGAACTTTATACAGTTGGCAGAAATAACTTTGGTCAACTCGGAACAGGTATTTCTACAGGAGATGGTATCAAC
GATAGAATTGTGAAAGTAGATCCAATCCGAGATATTTTCAGCATTCACTTCAATCAAAATAATTCGATGGCAATCTCTCA
AAACGGAAGAGTTTATACCTGGGGAGCTAACTCGAAAGGTCAACTAGGAATCGGAAATAATAACACGGACCCGGCCAGAG
CAAGCGACCCCGGAAACAGACAACCTCCTACCGAGATTCCCGGAATCAACGACGCCGTGATGGGAGCTTATGGTTTTAAT
CATGCGTTGGTTTTAAAATCAGACGGAACCGTAGTTGCATTCGGCCAAAATAATGTAGGTCAGCTGGGAAATGGAGAAAA
CAATTTAAACCGCAATTCCTTTTCTTCTAACCCAGTTAATGTTGTACAACTTAGAAATGTAATCCAAGTAATTGCGGGCT
CGGAACATTCCGCCGCCCTTACGGAAAACGGAGAGGTTTATATTTGGGGTAGAAATCAATACGGAAATTTAGGCAACGGT
ATTATCTCTCCGGCTAACACGGTTCAATCCGTTCCAGTAAAAGTAGAAGGCCTTTCCAAAATTAAACAAATCGCAAACGG
TAGAGATCATATTCTGGCGTTAACGTCTGATGGAAAAATTTATTCCTGGGGTTTAAATGCAAGCGGCCAATTAGGAATCG
GAGGAAATGGAAATCCTCCACCCACTCCAATCCCAACACAAATTTTGAATATTCAAGATGTTGCGTCTATTTGGGCTGGC
GGAACTCAAAGTTTTGCAATCTTAAAAAATGGAGAAGTAAAAGGTTGGGGAGCAAACGGAAATATGGCAAGCCTTGCTCT
TGGAGAATCAAATACTCAAAAAGTTTACGAGCCGAATAAAGCAGTAGTAGGTATTGATAACGTAGTTCATTTCGGTTGCG
GCGCTACCCATAACTTCGCACTTCTTGGAAACGGAGAAATCTATGGTTGGGGTTGGAATTTTAAAGGTTCTTTAGGGAGA
ACCGATCTACAAAACAACTGGGGGGCACCAAATCCAGTATACATAAAATTTCCATAA

Upstream 100 bases:

>100_bases
GAATCCTTGACGTTCACAATGCCCTTATTTTTTTGATTATTAAATGAGAATAATTCTTAATCTCATTATTATATATTAGG
AGAAATCGTGAAACAAAAAA

Downstream 100 bases:

>100_bases
TATTATAAATTTAAAATGAATTTGAATTTCAGTTTTTTTTCATCAATTTATATCTTTTTAAAATACAGAGTGGGCAAGTT
TTCGGTCGCTCTGTTTTTTA

Product: regulator of chromosome condensation

Products: NA

Alternate protein names: BNR Repeat-Containing Protein; Alpha-Tubulin Suppressor; Cell Wall Anchor Domain-Containing Protein; S-Layer Domain Protein; RCC1 Repeat-Containing Protein; BNR Repeat Containing Protein; BNR Repeat Domain Protein; RCC1 Repeat Protein; Fibronectin Type III Domain-Containing Protein; RCC1 Domain-Containing Protein; S-Layer Domain-Containing Protein; RCC1 Domain-Containing Protein Alpha-Tubulin Suppressor; Bnr Repeat Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; RCC1 Repeat Domain Protein; IPT/TIG Domain Protein; RCC1 Repeat Domain-Containing Protein; Cellulosome Dockerin Type I; ATS1 Domain Repeat Lipoprotein; RTX Family Exoprotein; Regulator Of Chromosome Condensation-Like Protein; Rhs Family Protein; Cysteine-Rich Repeat Protein; Ig Domain-Containing Domain-Containing Protein; Cell Surface Receptor IPT/TIG Domain-Containing Protein; BLIP-II Repeat-Containing Protein; Serine/Threonine Protein Kinase; Copper Amine Oxidase Domain Protein; Ig Domain Domain Protein; Hyalin; RCC1 Repeat- And Reductase Domain-Containing Protein; Ig Family Protein; ATS1 Domain Repeat Protein; Copper Amine Oxidase Domain-Containing Protein; Lipoprotein; BNR Repeat Domain-Containing Protein

Number of amino acids: Translated: 498; Mature: 498

Protein sequence:

>498_residues
MHSFYIPFGSSLVVLNLEPILPLCFWPHSLRQPGPKTKVLSPREGEILTVYQLETTVQANSDGEFEIFHEGNKLFSFQST
PSSPQTSPTFKPKNGHNTIQIRFKKSNGFVLSQEIHFYFGTKLSAGGAHSGFLINGELYTVGRNNFGQLGTGISTGDGIN
DRIVKVDPIRDIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGINDAVMGAYGFN
HALVLKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEVYIWGRNQYGNLGNG
IISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGKIYSWGLNASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAG
GTQSFAILKNGEVKGWGANGNMASLALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR
TDLQNNWGAPNPVYIKFP

Sequences:

>Translated_498_residues
MHSFYIPFGSSLVVLNLEPILPLCFWPHSLRQPGPKTKVLSPREGEILTVYQLETTVQANSDGEFEIFHEGNKLFSFQST
PSSPQTSPTFKPKNGHNTIQIRFKKSNGFVLSQEIHFYFGTKLSAGGAHSGFLINGELYTVGRNNFGQLGTGISTGDGIN
DRIVKVDPIRDIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGINDAVMGAYGFN
HALVLKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEVYIWGRNQYGNLGNG
IISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGKIYSWGLNASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAG
GTQSFAILKNGEVKGWGANGNMASLALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR
TDLQNNWGAPNPVYIKFP
>Mature_498_residues
MHSFYIPFGSSLVVLNLEPILPLCFWPHSLRQPGPKTKVLSPREGEILTVYQLETTVQANSDGEFEIFHEGNKLFSFQST
PSSPQTSPTFKPKNGHNTIQIRFKKSNGFVLSQEIHFYFGTKLSAGGAHSGFLINGELYTVGRNNFGQLGTGISTGDGIN
DRIVKVDPIRDIFSIHFNQNNSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGINDAVMGAYGFN
HALVLKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAALTENGEVYIWGRNQYGNLGNG
IISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGKIYSWGLNASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAG
GTQSFAILKNGEVKGWGANGNMASLALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR
TDLQNNWGAPNPVYIKFP

Specific function: Unknown

COG id: COG5184

COG function: function code DZ; Alpha-tubulin suppressor and related RCC1 domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI126032348, Length=373, Percent_Identity=31.0991957104558, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI57242759, Length=281, Percent_Identity=33.4519572953737, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI126131099, Length=348, Percent_Identity=28.735632183908, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI4557445, Length=292, Percent_Identity=32.1917808219178, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI63025188, Length=294, Percent_Identity=30.6122448979592, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI37620181, Length=294, Percent_Identity=30.6122448979592, Blast_Score=120, Evalue=4e-27,
Organism=Homo sapiens, GI6912330, Length=413, Percent_Identity=26.8765133171913, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI7657152, Length=335, Percent_Identity=30.4477611940298, Blast_Score=118, Evalue=2e-26,
Organism=Homo sapiens, GI61563742, Length=292, Percent_Identity=30.8219178082192, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI259089405, Length=292, Percent_Identity=30.8219178082192, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI114796646, Length=315, Percent_Identity=28.2539682539683, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI4502801, Length=315, Percent_Identity=28.2539682539683, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI114796642, Length=315, Percent_Identity=28.2539682539683, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI114796644, Length=315, Percent_Identity=28.2539682539683, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI110825982, Length=266, Percent_Identity=30.0751879699248, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4506581, Length=315, Percent_Identity=28.8888888888889, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI209969703, Length=266, Percent_Identity=28.1954887218045, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI29789090, Length=266, Percent_Identity=28.1954887218045, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI78190492, Length=312, Percent_Identity=28.8461538461538, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI13540582, Length=312, Percent_Identity=26.6025641025641, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI30039692, Length=270, Percent_Identity=27.4074074074074, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI222136641, Length=345, Percent_Identity=24.3478260869565, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI169170558, Length=245, Percent_Identity=25.3061224489796, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI169171160, Length=245, Percent_Identity=25.3061224489796, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI310110730, Length=179, Percent_Identity=32.4022346368715, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17510153, Length=290, Percent_Identity=30.3448275862069, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71988539, Length=375, Percent_Identity=24.8, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI193203348, Length=368, Percent_Identity=26.6304347826087, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994328, Length=334, Percent_Identity=25.748502994012, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321341, Length=367, Percent_Identity=24.5231607629428, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI281361147, Length=300, Percent_Identity=34.3333333333333, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24655113, Length=297, Percent_Identity=32.6599326599327, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24655115, Length=297, Percent_Identity=32.6599326599327, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19920516, Length=321, Percent_Identity=27.4143302180685, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24658888, Length=357, Percent_Identity=26.6106442577031, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24658881, Length=357, Percent_Identity=26.6106442577031, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI18859625, Length=357, Percent_Identity=26.6106442577031, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24582121, Length=403, Percent_Identity=25.8064516129032, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI20129257, Length=403, Percent_Identity=25.8064516129032, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24580714, Length=313, Percent_Identity=29.3929712460064, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI116008159, Length=86, Percent_Identity=45.3488372093023, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24649791, Length=265, Percent_Identity=27.1698113207547, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355837, Length=161, Percent_Identity=31.6770186335404, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53468; Mature: 53468

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50012 RCC1_3 ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSFYIPFGSSLVVLNLEPILPLCFWPHSLRQPGPKTKVLSPREGEILTVYQLETTVQAN
CCEEEEECCCCEEEEECCCCCCEEECCHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEEC
SDGEFEIFHEGNKLFSFQSTPSSPQTSPTFKPKNGHNTIQIRFKKSNGFVLSQEIHFYFG
CCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEE
TKLSAGGAHSGFLINGELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIRDIFSIHFNQN
CEEECCCCCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCC
NSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGINDAVMGAYGFN
CCEEEECCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
HALVLKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAAL
EEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
TENGEVYIWGRNQYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGKI
ECCCEEEEEECCCCCCCCCCCCCCCHHHEECCEEEHHHHHHHHHHCCCCEEEEEECCCEE
YSWGLNASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANG
EEECCCCCCEEEECCCCCCCCCCCCCEEECHHHHHHHHCCCCCEEEEEECCEEEEECCCC
NMASLALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR
CEEEEEECCCCCCEEECCCCEEEEECCEEEECCCCCCCEEEEECCEEEEECCCCCCCCCC
TDLQNNWGAPNPVYIKFP
CCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MHSFYIPFGSSLVVLNLEPILPLCFWPHSLRQPGPKTKVLSPREGEILTVYQLETTVQAN
CCEEEEECCCCEEEEECCCCCCEEECCHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEEC
SDGEFEIFHEGNKLFSFQSTPSSPQTSPTFKPKNGHNTIQIRFKKSNGFVLSQEIHFYFG
CCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEEE
TKLSAGGAHSGFLINGELYTVGRNNFGQLGTGISTGDGINDRIVKVDPIRDIFSIHFNQN
CEEECCCCCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCC
NSMAISQNGRVYTWGANSKGQLGIGNNNTDPARASDPGNRQPPTEIPGINDAVMGAYGFN
CCEEEECCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
HALVLKSDGTVVAFGQNNVGQLGNGENNLNRNSFSSNPVNVVQLRNVIQVIAGSEHSAAL
EEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
TENGEVYIWGRNQYGNLGNGIISPANTVQSVPVKVEGLSKIKQIANGRDHILALTSDGKI
ECCCEEEEEECCCCCCCCCCCCCCCHHHEECCEEEHHHHHHHHHHCCCCEEEEEECCCEE
YSWGLNASGQLGIGGNGNPPPTPIPTQILNIQDVASIWAGGTQSFAILKNGEVKGWGANG
EEECCCCCCEEEECCCCCCCCCCCCCEEECHHHHHHHHCCCCCEEEEEECCEEEEECCCC
NMASLALGESNTQKVYEPNKAVVGIDNVVHFGCGATHNFALLGNGEIYGWGWNFKGSLGR
CEEEEEECCCCCCEEECCCCEEEEECCEEEECCCCCCCEEEEECCEEEEECCCCCCCCCC
TDLQNNWGAPNPVYIKFP
CCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA