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The map label for this gene is ompL1

Identifier: 45656861

GI number: 45656861

Start: 1173342

End: 1174304

Strand: Reverse

Name: ompL1

Synonym: LIC10973

Alternate gene names: NA

Gene position: 1174304-1173342 (Counterclockwise)

Preceding gene: 45656862

Following gene: 45656856

Centisome position: 27.46

GC content: 42.06

Gene sequence:

>963_bases
ATGATCCGTAACATAAGTAAGGCATTGCTCATTTTAGCCGTAGCATTATCTTCGGCTGCAAGCCTAAGTGCAAAAACATA
TGCAATTGTAGGATTTGGGTTACAGTTAGACCTAGGACAATTAGGAGGAACCATCACCAAAGATGGTTTAGACGCTGCAA
GTTATTATGGCCCGGTCCGATCAACAGATACTTGTACAGTAGGTCCAAACGATCCTACTTGTGTACAAAATCCAGGAAAA
CCTACAGGTGAAGGAAATTATCTAGGAGTTGCTCCCAGAAAAGCGATTCCTGCTGAAAATAAATTGATTACCCTCGATAG
AACTACTGGCGGCTTGATCAACGCAAGAAGCACTAAAGGCGCCATGGTCGGAGGAAACTTGATGGTAGGTTATGAGTCCG
ACTTTGGTAAATATTTTTTCTGGAGAGTTGCTGCAGAATATACTCAAAAAATTTCTGGCGGTATTACAAAAGCAGACATC
GCTGGTTATAACATTGTAGATATGACTTGGGGTTTTAGTTCTATCGTCATTCCTGCAACCGTTGGTATCAAATTGAATGT
TACTGAAGACGCTGCAATATATATGGGAGCAGGTTTAAACTATTTCAATGGTGGATGGAGTTTAAACGGATCAAACAACC
TCAAAGGAGGTCATGACATTTTAGCTGCAGCGGGAGCGGGAAGTGTTGCAAACTTGATCGCAGACGGAACAGATCCAGTC
ACGACTCGTGAACACGTTCGATTTAGAACTTCTGGAATTGCTCCTAACTTTTTAATTGGAACTCAGGCCAGAGTAACCGA
TAAAGGACACGTTTTTCTTGAATTAGAAACGATCATGTCTGCTGCGTATGCAGTTGGTAAAACTCAATCTGCAGGAGGAG
CTACGAACCTTTCTCCTTTTCCTGCATATCCAATCGTTGTCGGTGGGCAAATCTACAGATTCGGTTATAAACACGAACTC
TAA

Upstream 100 bases:

>100_bases
AACTTCTAAAGTTCCCCCTGTATCCGGATTTAAGAGCCAAATACAAATCTTGCCGGAAACACAATCAAATTCCAATCGAA
TCGTGAGTAAGGAGTTATCA

Downstream 100 bases:

>100_bases
GATTCAATCAATACCGATTTCTATTTTAAAAGGCTCTCTTTTGAGAGCCTTTTTATTTCTAAGTCCTTTTCTTATAACCT
ATCACAAACTATTCTATTAG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MIRNISKALLILAVALSSAASLSAKTYAIVGFGLQLDLGQLGGTITKDGLDAASYYGPVRSTDTCTVGPNDPTCVQNPGK
PTGEGNYLGVAPRKAIPAENKLITLDRTTGGLINARSTKGAMVGGNLMVGYESDFGKYFFWRVAAEYTQKISGGITKADI
AGYNIVDMTWGFSSIVIPATVGIKLNVTEDAAIYMGAGLNYFNGGWSLNGSNNLKGGHDILAAAGAGSVANLIADGTDPV
TTREHVRFRTSGIAPNFLIGTQARVTDKGHVFLELETIMSAAYAVGKTQSAGGATNLSPFPAYPIVVGGQIYRFGYKHEL

Sequences:

>Translated_320_residues
MIRNISKALLILAVALSSAASLSAKTYAIVGFGLQLDLGQLGGTITKDGLDAASYYGPVRSTDTCTVGPNDPTCVQNPGK
PTGEGNYLGVAPRKAIPAENKLITLDRTTGGLINARSTKGAMVGGNLMVGYESDFGKYFFWRVAAEYTQKISGGITKADI
AGYNIVDMTWGFSSIVIPATVGIKLNVTEDAAIYMGAGLNYFNGGWSLNGSNNLKGGHDILAAAGAGSVANLIADGTDPV
TTREHVRFRTSGIAPNFLIGTQARVTDKGHVFLELETIMSAAYAVGKTQSAGGATNLSPFPAYPIVVGGQIYRFGYKHEL
>Mature_320_residues
MIRNISKALLILAVALSSAASLSAKTYAIVGFGLQLDLGQLGGTITKDGLDAASYYGPVRSTDTCTVGPNDPTCVQNPGK
PTGEGNYLGVAPRKAIPAENKLITLDRTTGGLINARSTKGAMVGGNLMVGYESDFGKYFFWRVAAEYTQKISGGITKADI
AGYNIVDMTWGFSSIVIPATVGIKLNVTEDAAIYMGAGLNYFNGGWSLNGSNNLKGGHDILAAAGAGSVANLIADGTDPV
TTREHVRFRTSGIAPNFLIGTQARVTDKGHVFLELETIMSAAYAVGKTQSAGGATNLSPFPAYPIVVGGQIYRFGYKHEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33457; Mature: 33457

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRNISKALLILAVALSSAASLSAKTYAIVGFGLQLDLGQLGGTITKDGLDAASYYGPVR
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHCCEECCCCCCHHHHCCCCC
STDTCTVGPNDPTCVQNPGKPTGEGNYLGVAPRKAIPAENKLITLDRTTGGLINARSTKG
CCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCC
AMVGGNLMVGYESDFGKYFFWRVAAEYTQKISGGITKADIAGYNIVDMTWGFSSIVIPAT
EEECCEEEEEEECCCCCEEEHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCEEEEEEE
VGIKLNVTEDAAIYMGAGLNYFNGGWSLNGSNNLKGGHDILAAAGAGSVANLIADGTDPV
EEEEEEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCHHHHHHCCCCCCC
TTREHVRFRTSGIAPNFLIGTQARVTDKGHVFLELETIMSAAYAVGKTQSAGGATNLSPF
CCHHHEEEEECCCCCCEEECCCEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCC
PAYPIVVGGQIYRFGYKHEL
CCCCEEECCEEEEECCCCCC
>Mature Secondary Structure
MIRNISKALLILAVALSSAASLSAKTYAIVGFGLQLDLGQLGGTITKDGLDAASYYGPVR
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHCCEECCCCCCHHHHCCCCC
STDTCTVGPNDPTCVQNPGKPTGEGNYLGVAPRKAIPAENKLITLDRTTGGLINARSTKG
CCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEECCCCC
AMVGGNLMVGYESDFGKYFFWRVAAEYTQKISGGITKADIAGYNIVDMTWGFSSIVIPAT
EEECCEEEEEEECCCCCEEEHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCEEEEEEE
VGIKLNVTEDAAIYMGAGLNYFNGGWSLNGSNNLKGGHDILAAAGAGSVANLIADGTDPV
EEEEEEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCHHHHHHCCCCCCC
TTREHVRFRTSGIAPNFLIGTQARVTDKGHVFLELETIMSAAYAVGKTQSAGGATNLSPF
CCHHHEEEEECCCCCCEEECCCEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCC
PAYPIVVGGQIYRFGYKHEL
CCCCEEECCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA