| Definition | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_005823 |
| Length | 4,277,185 |
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The map label for this gene is phuR
Identifier: 45656852
GI number: 45656852
Start: 1161704
End: 1164037
Strand: Reverse
Name: phuR
Synonym: LIC10964
Alternate gene names: 45656852
Gene position: 1164037-1161704 (Counterclockwise)
Preceding gene: 45656853
Following gene: 45656851
Centisome position: 27.22
GC content: 36.76
Gene sequence:
>2334_bases TTGAAAAAGCAGCTATATTATTATTTTAGAATATTTTTATTTTCGATACTTATTTCCCCAATTTCCATTTTAGCGTTAGA CGTCACGCTAACAGGTATAGTAAAAGACAAAAACGGAAATTCTATTTCCAATGTAAAAATTATACTCCAAGAATCTAGAA AAACTACGATCACAAATGAAAAAGGAGAATTTGTTTTAAATCATGTTCCCCCTGGCAAATATACATTAGTCGCAATATCA AGAGGTTATCAATCCGAAACTATTTCAATTACAATCGGTGAAAAAGATGAAAAAACACAATTTACTCTTTTAGAAAGTTC TTTGGACCAATCCGCGATCAACGTCACCGCTAAATCCACAAATTCAGATTTTTTAACTGCTCCACAACCAATTACCGTTT TGTCGGGTAGACAATTAGACCGCCAAAGGGGAGAAACTGCAATGTCTGCTATCAACAATACTCCGGGAGTTTCCAACCTT ACAACAGGATCAGGAACTTCTAAACCGATCATCCGAGGCCTTACCGGACAAAGGGTTTTAGTTATGACCGACGGTATTCG TCAAGAAGAACAACAATTTGGTGACGACCACACAGTAGAATTAGATTCTTTCAATATTCAAAAAATTGAAATTATAAGAG GCCCGGGTAGTTTACTCTACGGCTCAGACGCTCTTGGAGGTGTAGTAAATGTCATTCGAGACAAAGCACCTCTTTCCGAA GAAGGAATTCCAAAGATGGCAGGCATTTTCAATTCCAACAGTTATTCTAACAACAAACAGGATGCTGGCAACTTTGCAAT CTACGGAAATCTAAACGGTTTCGGTTATCGTGCTAGCTCCAATTCCAGAAAAGCGGGTAAAATTACTACTCCGAACGGAA CCCTTCGTAATACAGGGATGATAGAAAAAAATCAAAGTGCGTCCATTGGTTTGGACGGGGATTGGGGTAATTTTTATTTG GATTCTTTTAAAAGGGAACAAACCCAAGATCTTTTAGACAATCCAAACGAAAATCCTGGAGCTACTGTCTCTCAAAAACT TCTTCACGAGAAATCTCATTTTCATTCGTTTTTTATTTTTTCCGCAGGAAACTTGGAACTTGATTTTTCCTATCAAAGAA ACAATCGAAGAGAAATTGAATCTAAAAATAAACTTCTACCAATTCAAGATATTCTTTTGGACAAAAATGCAGAAGTTTTA GATAAATCTTTTCAGTTCTATCAAGTGACTTCCAAAGAAAAATACCAAGGTTTAAACCTTTTTCTAGACACCACTACAGC GGACGCTAAATTTCACCATAAACCTATATTCAATTTTTTGAAAGGAACCATCGGAATATCTGGCCTGGAACAAAGAAATA AAACAATCGGTACAGAGCCGTTGATTCCTTCCTACGGTATTATTAACATTGCCGGTTATTTTTTAGAAGAACTTAAACTG GGTTCCTTAACTTTCAGCGCTGGAATTAGAGGTGATAAACGTTCCGTCGACATTCGAAATAACCAAACCCTTGGTGTCTC CGAACAAACCAAAAATTATTATATGACAACCGGTTCCACCGGTGTTGTATGGAGGATCTATAAATCTTTTTCCACCATTT TTAATTACGGACGCGGTTTTAGGGCTCCTACTCCTTTTGAGCTTTTCTCATACGGAGTCCACGAAGGAACCGGTAAATTT GAAATTGGAAACAACCATCTAAAACCTGAATATTCAAATAATCTGGATTTTTCTCTGAGATTTGCTTCTTCTAAAATTCA AACTGAGATTAGCATTTTTCAAAATCATATTCAAAATTTCATATATGCTGCAAGTATAGCCCAAATAGACTTGGATTCTG GTTTACCAAAATACGAGTATAAACAAGGAAACGCGATTTTAAAAGGAGGAGAATTTTCGATCCAAGCAGAACTTTTCCGT AAACTCGTTTTTTCCGGTGGAATCGATATTGTTTATTCTAGAAATCAAAGCGATACTCATCCTCTTCCTAGAACTACACC AAATCGAGCACGGGCTGGTCTTAGATGGACGGAAGATTCTATTTTAGGTTTAAAAAACTTCTACTTTTCCATCAACGGTA GGTTTTATGACTCTCAATATAGAGTCGATCCTAAAGAAACACCTACCAAAGGTTATAATCTTATAGACGCTGGACTCGGT TTTGAACTTCCTCATTTCGGAGACGGAACTTCAAAGCCTACTGTAGACTTGAGTATTCAAAATGTATTCAATGTTTCTTA TGTAGATCATCTCAGTAGATATAAGGACTACGCTCTCAACCCGGGTTTGAACGCGATTTTAAAGGTTTCTTTTCCGTTCA CAGCAATTCCATAG
Upstream 100 bases:
>100_bases CCCTATCAAAATAGATTTGGTCGAGCACCTCCTTTTTTACTCCCACTTTCTTAAATCAATTTTTTGATCTAATGGGCTTT TTTAGCCCGGGAGGTGTCGC
Downstream 100 bases:
>100_bases GAGATTATATATGAAAAAGTATATTTTAATATTCTTAACTGTTCTTATTCTTTTTTGTCAAAATGAAGATAAAAAAAACA ACCAAGATCTGATGATCCGT
Product: TonB-dependent outer membrane hemin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 777; Mature: 777
Protein sequence:
>777_residues MKKQLYYYFRIFLFSILISPISILALDVTLTGIVKDKNGNSISNVKIILQESRKTTITNEKGEFVLNHVPPGKYTLVAIS RGYQSETISITIGEKDEKTQFTLLESSLDQSAINVTAKSTNSDFLTAPQPITVLSGRQLDRQRGETAMSAINNTPGVSNL TTGSGTSKPIIRGLTGQRVLVMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALGGVVNVIRDKAPLSE EGIPKMAGIFNSNSYSNNKQDAGNFAIYGNLNGFGYRASSNSRKAGKITTPNGTLRNTGMIEKNQSASIGLDGDWGNFYL DSFKREQTQDLLDNPNENPGATVSQKLLHEKSHFHSFFIFSAGNLELDFSYQRNNRREIESKNKLLPIQDILLDKNAEVL DKSFQFYQVTSKEKYQGLNLFLDTTTADAKFHHKPIFNFLKGTIGISGLEQRNKTIGTEPLIPSYGIINIAGYFLEELKL GSLTFSAGIRGDKRSVDIRNNQTLGVSEQTKNYYMTTGSTGVVWRIYKSFSTIFNYGRGFRAPTPFELFSYGVHEGTGKF EIGNNHLKPEYSNNLDFSLRFASSKIQTEISIFQNHIQNFIYAASIAQIDLDSGLPKYEYKQGNAILKGGEFSIQAELFR KLVFSGGIDIVYSRNQSDTHPLPRTTPNRARAGLRWTEDSILGLKNFYFSINGRFYDSQYRVDPKETPTKGYNLIDAGLG FELPHFGDGTSKPTVDLSIQNVFNVSYVDHLSRYKDYALNPGLNAILKVSFPFTAIP
Sequences:
>Translated_777_residues MKKQLYYYFRIFLFSILISPISILALDVTLTGIVKDKNGNSISNVKIILQESRKTTITNEKGEFVLNHVPPGKYTLVAIS RGYQSETISITIGEKDEKTQFTLLESSLDQSAINVTAKSTNSDFLTAPQPITVLSGRQLDRQRGETAMSAINNTPGVSNL TTGSGTSKPIIRGLTGQRVLVMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALGGVVNVIRDKAPLSE EGIPKMAGIFNSNSYSNNKQDAGNFAIYGNLNGFGYRASSNSRKAGKITTPNGTLRNTGMIEKNQSASIGLDGDWGNFYL DSFKREQTQDLLDNPNENPGATVSQKLLHEKSHFHSFFIFSAGNLELDFSYQRNNRREIESKNKLLPIQDILLDKNAEVL DKSFQFYQVTSKEKYQGLNLFLDTTTADAKFHHKPIFNFLKGTIGISGLEQRNKTIGTEPLIPSYGIINIAGYFLEELKL GSLTFSAGIRGDKRSVDIRNNQTLGVSEQTKNYYMTTGSTGVVWRIYKSFSTIFNYGRGFRAPTPFELFSYGVHEGTGKF EIGNNHLKPEYSNNLDFSLRFASSKIQTEISIFQNHIQNFIYAASIAQIDLDSGLPKYEYKQGNAILKGGEFSIQAELFR KLVFSGGIDIVYSRNQSDTHPLPRTTPNRARAGLRWTEDSILGLKNFYFSINGRFYDSQYRVDPKETPTKGYNLIDAGLG FELPHFGDGTSKPTVDLSIQNVFNVSYVDHLSRYKDYALNPGLNAILKVSFPFTAIP >Mature_777_residues MKKQLYYYFRIFLFSILISPISILALDVTLTGIVKDKNGNSISNVKIILQESRKTTITNEKGEFVLNHVPPGKYTLVAIS RGYQSETISITIGEKDEKTQFTLLESSLDQSAINVTAKSTNSDFLTAPQPITVLSGRQLDRQRGETAMSAINNTPGVSNL TTGSGTSKPIIRGLTGQRVLVMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALGGVVNVIRDKAPLSE EGIPKMAGIFNSNSYSNNKQDAGNFAIYGNLNGFGYRASSNSRKAGKITTPNGTLRNTGMIEKNQSASIGLDGDWGNFYL DSFKREQTQDLLDNPNENPGATVSQKLLHEKSHFHSFFIFSAGNLELDFSYQRNNRREIESKNKLLPIQDILLDKNAEVL DKSFQFYQVTSKEKYQGLNLFLDTTTADAKFHHKPIFNFLKGTIGISGLEQRNKTIGTEPLIPSYGIINIAGYFLEELKL GSLTFSAGIRGDKRSVDIRNNQTLGVSEQTKNYYMTTGSTGVVWRIYKSFSTIFNYGRGFRAPTPFELFSYGVHEGTGKF EIGNNHLKPEYSNNLDFSLRFASSKIQTEISIFQNHIQNFIYAASIAQIDLDSGLPKYEYKQGNAILKGGEFSIQAELFR KLVFSGGIDIVYSRNQSDTHPLPRTTPNRARAGLRWTEDSILGLKNFYFSINGRFYDSQYRVDPKETPTKGYNLIDAGLG FELPHFGDGTSKPTVDLSIQNVFNVSYVDHLSRYKDYALNPGLNAILKVSFPFTAIP
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=165, Percent_Identity=34.5454545454545, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1788478, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=5e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 86628; Mature: 86628
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKQLYYYFRIFLFSILISPISILALDVTLTGIVKDKNGNSISNVKIILQESRKTTITNE CCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCEECCC KGEFVLNHVPPGKYTLVAISRGYQSETISITIGEKDEKTQFTLLESSLDQSAINVTAKST CCCEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCCCEEEEEHHCCCCCEEEEEEECC NSDFLTAPQPITVLSGRQLDRQRGETAMSAINNTPGVSNLTTGSGTSKPIIRGLTGQRVL CCCEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHCCCCCCEEE VMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALGGVVNVIRDKAPLSE EEECCCCHHHHHCCCCCEEEECCCCCEEEEEEECCCCEEECCCHHHHHHHHHHCCCCCCC EGIPKMAGIFNSNSYSNNKQDAGNFAIYGNLNGFGYRASSNSRKAGKITTPNGTLRNTGM CCCCHHHHEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCC IEKNQSASIGLDGDWGNFYLDSFKREQTQDLLDNPNENPGATVSQKLLHEKSHFHSFFIF EECCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEE SAGNLELDFSYQRNNRREIESKNKLLPIQDILLDKNAEVLDKSFQFYQVTSKEKYQGLNL ECCCEEEEEEECCCCCHHHHHCCCCCCHHHHHCCCCHHHHHCCCEEEEECCCCCCCCEEE FLDTTTADAKFHHKPIFNFLKGTIGISGLEQRNKTIGTEPLIPSYGIINIAGYFLEELKL EEECCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GSLTFSAGIRGDKRSVDIRNNQTLGVSEQTKNYYMTTGSTGVVWRIYKSFSTIFNYGRGF CCEEEECCCCCCCCEEEECCCCEECCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC RAPTPFELFSYGVHEGTGKFEIGNNHLKPEYSNNLDFSLRFASSKIQTEISIFQNHIQNF CCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH IYAASIAQIDLDSGLPKYEYKQGNAILKGGEFSIQAELFRKLVFSGGIDIVYSRNQSDTH HHHHHEEEEECCCCCCCCEECCCCEEEECCCEEEHHHHHHHHHHCCCEEEEEECCCCCCC PLPRTTPNRARAGLRWTEDSILGLKNFYFSINGRFYDSQYRVDPKETPTKGYNLIDAGLG CCCCCCCHHHHCCCEECCCHHEEEEEEEEEECCEEECCEEEECCCCCCCCCCEEEECCCC FELPHFGDGTSKPTVDLSIQNVFNVSYVDHLSRYKDYALNPGLNAILKVSFPFTAIP CCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure MKKQLYYYFRIFLFSILISPISILALDVTLTGIVKDKNGNSISNVKIILQESRKTTITNE CCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCEECCC KGEFVLNHVPPGKYTLVAISRGYQSETISITIGEKDEKTQFTLLESSLDQSAINVTAKST CCCEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCCCEEEEEHHCCCCCEEEEEEECC NSDFLTAPQPITVLSGRQLDRQRGETAMSAINNTPGVSNLTTGSGTSKPIIRGLTGQRVL CCCEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHCCCCCCEEE VMTDGIRQEEQQFGDDHTVELDSFNIQKIEIIRGPGSLLYGSDALGGVVNVIRDKAPLSE EEECCCCHHHHHCCCCCEEEECCCCCEEEEEEECCCCEEECCCHHHHHHHHHHCCCCCCC EGIPKMAGIFNSNSYSNNKQDAGNFAIYGNLNGFGYRASSNSRKAGKITTPNGTLRNTGM CCCCHHHHEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCC IEKNQSASIGLDGDWGNFYLDSFKREQTQDLLDNPNENPGATVSQKLLHEKSHFHSFFIF EECCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEE SAGNLELDFSYQRNNRREIESKNKLLPIQDILLDKNAEVLDKSFQFYQVTSKEKYQGLNL ECCCEEEEEEECCCCCHHHHHCCCCCCHHHHHCCCCHHHHHCCCEEEEECCCCCCCCEEE FLDTTTADAKFHHKPIFNFLKGTIGISGLEQRNKTIGTEPLIPSYGIINIAGYFLEELKL EEECCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC GSLTFSAGIRGDKRSVDIRNNQTLGVSEQTKNYYMTTGSTGVVWRIYKSFSTIFNYGRGF CCEEEECCCCCCCCEEEECCCCEECCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC RAPTPFELFSYGVHEGTGKFEIGNNHLKPEYSNNLDFSLRFASSKIQTEISIFQNHIQNF CCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH IYAASIAQIDLDSGLPKYEYKQGNAILKGGEFSIQAELFRKLVFSGGIDIVYSRNQSDTH HHHHHEEEEECCCCCCCCEECCCCEEEECCCEEEHHHHHHHHHHCCCEEEEEECCCCCCC PLPRTTPNRARAGLRWTEDSILGLKNFYFSINGRFYDSQYRVDPKETPTKGYNLIDAGLG CCCCCCCHHHHCCCEECCCHHEEEEEEEEEECCEEECCEEEECCCCCCCCCCEEEECCCC FELPHFGDGTSKPTVDLSIQNVFNVSYVDHLSRYKDYALNPGLNAILKVSFPFTAIP CCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]