Click here to switch to the map view.

The map label for this gene is 45656626

Identifier: 45656626

GI number: 45656626

Start: 890170

End: 890649

Strand: Reverse

Name: 45656626

Synonym: LIC10730

Alternate gene names: NA

Gene position: 890649-890170 (Counterclockwise)

Preceding gene: 45656631

Following gene: 45656624

Centisome position: 20.82

GC content: 40.0

Gene sequence:

>480_bases
ATGGATTCAAAATTTGTTGTTCGTTTTTTTCTGATCTGCTTTTTTTGCGCTTCCATTATAACCACGAATTGTTTTGCCCG
AGTCGACTGGGATTCTCCCAATCCTAAAAAAGGAAAAAATGCTCCATCACCAGACGCTTTTCCTACCGCAGAAGACGCCA
ATCTTACGCAAGTGGAACGCGCCAAACTGATCCAAGAAAAAAAACGAATCGGACTTTCTCCGGAAGGGTTTGCACTGATC
GGTCAAGAATCTAAATTCTCTTACGAAAACGCCTGCACTCAGTTACTCTCTAAATGTCAGGCAAACTGTATGGAGGAATG
GTATCCTTTTACTTCTATTTTCTTACCAATTATAGGTTATAGAAGCGCAAAACAAAGACAATGTATGGATCGATGTAATC
AATTTTGCAAACTACCTAGTAGAATTCTATCCGGAGAGACAAGTACAACTCCTTCGACCCCAGTTTCATTTCCTCAATAA

Upstream 100 bases:

>100_bases
TTTTAAACCGACGGACCTTTAAACAACTTTCAAACCAGGATTTGAGTAGATTTTTTTTAATCTTTTGTAAGAATTTATTC
ATTGAGACTGTAGTTTTACG

Downstream 100 bases:

>100_bases
AATTCTTTCAATAAACACTGATTAGTCGGTTATTTGTTTCGCAATACTTCGACTGAACTCAATTTTACTCTATAAAACGA
AATCCATGAGGAGTGTTTGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MDSKFVVRFFLICFFCASIITTNCFARVDWDSPNPKKGKNAPSPDAFPTAEDANLTQVERAKLIQEKKRIGLSPEGFALI
GQESKFSYENACTQLLSKCQANCMEEWYPFTSIFLPIIGYRSAKQRQCMDRCNQFCKLPSRILSGETSTTPSTPVSFPQ

Sequences:

>Translated_159_residues
MDSKFVVRFFLICFFCASIITTNCFARVDWDSPNPKKGKNAPSPDAFPTAEDANLTQVERAKLIQEKKRIGLSPEGFALI
GQESKFSYENACTQLLSKCQANCMEEWYPFTSIFLPIIGYRSAKQRQCMDRCNQFCKLPSRILSGETSTTPSTPVSFPQ
>Mature_159_residues
MDSKFVVRFFLICFFCASIITTNCFARVDWDSPNPKKGKNAPSPDAFPTAEDANLTQVERAKLIQEKKRIGLSPEGFALI
GQESKFSYENACTQLLSKCQANCMEEWYPFTSIFLPIIGYRSAKQRQCMDRCNQFCKLPSRILSGETSTTPSTPVSFPQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17945; Mature: 17945

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKFVVRFFLICFFCASIITTNCFARVDWDSPNPKKGKNAPSPDAFPTAEDANLTQVER
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AKLIQEKKRIGLSPEGFALIGQESKFSYENACTQLLSKCQANCMEEWYPFTSIFLPIIGY
HHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
RSAKQRQCMDRCNQFCKLPSRILSGETSTTPSTPVSFPQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSKFVVRFFLICFFCASIITTNCFARVDWDSPNPKKGKNAPSPDAFPTAEDANLTQVER
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
AKLIQEKKRIGLSPEGFALIGQESKFSYENACTQLLSKCQANCMEEWYPFTSIFLPIIGY
HHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
RSAKQRQCMDRCNQFCKLPSRILSGETSTTPSTPVSFPQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA