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The map label for this gene is fliD

Identifier: 45656621

GI number: 45656621

Start: 880603

End: 882522

Strand: Direct

Name: fliD

Synonym: LIC10723

Alternate gene names: 45656621

Gene position: 880603-882522 (Clockwise)

Preceding gene: 45656618

Following gene: 45656622

Centisome position: 20.59

GC content: 38.44

Gene sequence:

>1920_bases
ATGCCCGCGTTTACGATTCCAGGACTTAGTTCCGGACAAGATACAAATTTGATCGTAAAAAAATTAGTGGAATTGGAAGC
AAAACCAATCCGTAGACTTGAACAACAGAATTCGTTTAACAAAGCTCAGTCGAAAGCGTGGAATGACCTCAAAACGGTAA
CAACCGATCTACAAGAAAAAACAAGAGCACTTATTTCTTTTACGGCTCCATTTGCGATGAAAAGTATCGTTTCCGAACCA
GAAGGGATTATTAGTGGAGACGCTTCTCGTTCCGCAAGTTCCGGTAAACGTAGGATCGAAATTAAAGAACTTGCAACTTC
TCACCAAATCTCAGGAGAAAAGACAGACGTAAACAAACAGATTCCCGCTGGAAAATTTAAAATTTTTTCCGGAGATTCCG
AAAAAGAAATAGAATTTTCAGGAGGAACGATTCGGGATCTTGCTTCTTCGATAAAAGTTTCCGCAGCAGGACTTGTAAAC
ACCGGACTTGTCAAAGTGGACGGAGATAATTACGTTCTTACTTTAACGGCGACTTTTTCCGGAAAAGATCGTAAACTAAA
GTTCGAAGATTCAAACGGAGTTTTACAAGCAGCCAATCTTGTAGGTGCAACTGAACCCGCAGATCCTCCTAAAGAGTTGA
ATTTTCTTCCCGAAAAAGATCAGATCCAAATTTTTCAACCTGAAAAATACGGAATCTCTTCCGATTCTAAACCCGTTTTT
AAAGAAGAAAGTGGTAAGAAGTGGATGGAAATTGCGAGCGTTGCTTCGTTTCAATTTGGAATTCCTACTACCGAGTTTAA
AAAAAACACAAAAATTGAACTTGCCACTTCTACCGAATTTGCACCGGAAGAAAAAATAGAATTAGGAATTCTTTATAAAG
AAAATGATAAGGAAAAAATGATCTTTGAAACCGCTTCCAAAGAGAATGGAAAAGTGGTTCTCAATTTAAAAAATTTTCCC
TCTGGTCAAAAGGTTCATAAAATACTTTTAGCGAATTCGAGTGGTAAAACCATTATATTAGATTCTTTTCATATAATAAT
TCCAGGAGAATTTAAAGGAGCTAAACCTTCCAAAGAAATTGCCGAGGCCAAGGACGCGGTTTTTTTAGTAGATGGGATCG
AAGTTAATCGTCCTAAAAACGAAGGGCTTACAGACGTTTTAGATGGGGTTTCTCTCAATCTTCATAAAAAAACAGAAGGG
CCCGTAAACATAGATATAAAAACGGATTCCGATAAAGGTATAGAGATGATCAAGGAGTTCGTGGCTGCTTATAACACTGT
ATTAAAATTTTCTAAAGAATCCACCGCCGTGGACAAGAATTCTACCGTTCGGGATGGAAAGGAAGAAGGTGGAGAAATTG
GGCAAAGTTTTTGGGAAGGAAAAACTAAAACGGGACTTTTATCCGGAGAACACACAGTGATTCGATTGATCGCTGGAATG
AAAACAGTTGCGAGCTCATCCTATCCGGTAAGCGGAGAAAATTCTGTCAGAATGTTAAGCGACATCGGTATTAATACCGG
TAAGGTGGGAAGTAAATGGGCCGATATACAAGACGGTTTTTTGATCTTGGATGAAGATAAGTTACGTTCTAAACTTGCCG
AAAATCCGGATTCTGTCAGAAATCTTTTTGCGATCGATACAAATTCGGATGCAAGGATGGATACTGGAGTTGGGGTAGAT
TTATTAGAACATATTAAACCTTACACTCAGTATGCGGGAGGGCTTGTTTCTGGAAAAGTGAAAATGCTCGAGGAACAGGT
TGCTGATAATAACAAGAAGATTAAAGAATTTGAAAATCATCTTGTAAGTTACGAGAAAAAATTGAAATCCAAGTTTCTCT
ATATGGAACAAGGAGTCGGTAAGAACAAAGCCGTAGGCGCTTATTTGAACAACAATCTAAAAGGCGCTAGAAACGAGTGA

Upstream 100 bases:

>100_bases
CTCGGAATATTTGAGTATTCCTACTGGTTTCTACATTGAATTTTTTCAATTTCCCTTATCTTTTTTCTGAATCGACCGAT
TAAGAATGTAGGAGGACAAG

Downstream 100 bases:

>100_bases
TAGAGTAGGAGAATGAAATGGAAATTTATATCAACGAACATCTCATAGATAGTTCTCTTGAAAACGAAAAAAAGTTAGGC
GAAGTTTTCGGAGAAGTCAA

Product: flagellar hook-associated protein FliD

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MPAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQSKAWNDLKTVTTDLQEKTRALISFTAPFAMKSIVSEP
EGIISGDASRSASSGKRRIEIKELATSHQISGEKTDVNKQIPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKVSAAGLVN
TGLVKVDGDNYVLTLTATFSGKDRKLKFEDSNGVLQAANLVGATEPADPPKELNFLPEKDQIQIFQPEKYGISSDSKPVF
KEESGKKWMEIASVASFQFGIPTTEFKKNTKIELATSTEFAPEEKIELGILYKENDKEKMIFETASKENGKVVLNLKNFP
SGQKVHKILLANSSGKTIILDSFHIIIPGEFKGAKPSKEIAEAKDAVFLVDGIEVNRPKNEGLTDVLDGVSLNLHKKTEG
PVNIDIKTDSDKGIEMIKEFVAAYNTVLKFSKESTAVDKNSTVRDGKEEGGEIGQSFWEGKTKTGLLSGEHTVIRLIAGM
KTVASSSYPVSGENSVRMLSDIGINTGKVGSKWADIQDGFLILDEDKLRSKLAENPDSVRNLFAIDTNSDARMDTGVGVD
LLEHIKPYTQYAGGLVSGKVKMLEEQVADNNKKIKEFENHLVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGARNE

Sequences:

>Translated_639_residues
MPAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQSKAWNDLKTVTTDLQEKTRALISFTAPFAMKSIVSEP
EGIISGDASRSASSGKRRIEIKELATSHQISGEKTDVNKQIPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKVSAAGLVN
TGLVKVDGDNYVLTLTATFSGKDRKLKFEDSNGVLQAANLVGATEPADPPKELNFLPEKDQIQIFQPEKYGISSDSKPVF
KEESGKKWMEIASVASFQFGIPTTEFKKNTKIELATSTEFAPEEKIELGILYKENDKEKMIFETASKENGKVVLNLKNFP
SGQKVHKILLANSSGKTIILDSFHIIIPGEFKGAKPSKEIAEAKDAVFLVDGIEVNRPKNEGLTDVLDGVSLNLHKKTEG
PVNIDIKTDSDKGIEMIKEFVAAYNTVLKFSKESTAVDKNSTVRDGKEEGGEIGQSFWEGKTKTGLLSGEHTVIRLIAGM
KTVASSSYPVSGENSVRMLSDIGINTGKVGSKWADIQDGFLILDEDKLRSKLAENPDSVRNLFAIDTNSDARMDTGVGVD
LLEHIKPYTQYAGGLVSGKVKMLEEQVADNNKKIKEFENHLVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGARNE
>Mature_638_residues
PAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQSKAWNDLKTVTTDLQEKTRALISFTAPFAMKSIVSEPE
GIISGDASRSASSGKRRIEIKELATSHQISGEKTDVNKQIPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKVSAAGLVNT
GLVKVDGDNYVLTLTATFSGKDRKLKFEDSNGVLQAANLVGATEPADPPKELNFLPEKDQIQIFQPEKYGISSDSKPVFK
EESGKKWMEIASVASFQFGIPTTEFKKNTKIELATSTEFAPEEKIELGILYKENDKEKMIFETASKENGKVVLNLKNFPS
GQKVHKILLANSSGKTIILDSFHIIIPGEFKGAKPSKEIAEAKDAVFLVDGIEVNRPKNEGLTDVLDGVSLNLHKKTEGP
VNIDIKTDSDKGIEMIKEFVAAYNTVLKFSKESTAVDKNSTVRDGKEEGGEIGQSFWEGKTKTGLLSGEHTVIRLIAGMK
TVASSSYPVSGENSVRMLSDIGINTGKVGSKWADIQDGFLILDEDKLRSKLAENPDSVRNLFAIDTNSDARMDTGVGVDL
LEHIKPYTQYAGGLVSGKVKMLEEQVADNNKKIKEFENHLVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGARNE

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Periplasmic flagellum. Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 69946; Mature: 69815

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQSKAWNDLKTVTTDLQEK
CCCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TRALISFTAPFAMKSIVSEPEGIISGDASRSASSGKRRIEIKELATSHQISGEKTDVNKQ
HHHHHHEHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCC
IPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKVSAAGLVNTGLVKVDGDNYVLTLTATFS
CCCCEEEEECCCCCCEEEECCCHHHHHHHHHHEEECCEEECCEEEECCCCEEEEEEEEEC
GKDRKLKFEDSNGVLQAANLVGATEPADPPKELNFLPEKDQIQIFQPEKYGISSDSKPVF
CCCCEEEEECCCCEEEEHHHCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCC
KEESGKKWMEIASVASFQFGIPTTEFKKNTKIELATSTEFAPEEKIELGILYKENDKEKM
CCCCCCHHHHHHHHHHEECCCCCHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCEE
IFETASKENGKVVLNLKNFPSGQKVHKILLANSSGKTIILDSFHIIIPGEFKGAKPSKEI
EEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHH
AEAKDAVFLVDGIEVNRPKNEGLTDVLDGVSLNLHKKTEGPVNIDIKTDSDKGIEMIKEF
HHCCCCEEEEECEEECCCCCCCHHHHHCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHH
VAAYNTVLKFSKESTAVDKNSTVRDGKEEGGEIGQSFWEGKTKTGLLSGEHTVIRLIAGM
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHH
KTVASSSYPVSGENSVRMLSDIGINTGKVGSKWADIQDGFLILDEDKLRSKLAENPDSVR
HHHCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHH
NLFAIDTNSDARMDTGVGVDLLEHIKPYTQYAGGLVSGKVKMLEEQVADNNKKIKEFENH
EEEEEECCCCCCCCCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
LVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGARNE
HHHHHHHHHHHHHHHHCCCCCCCEEEHEECCCCCCCCCC
>Mature Secondary Structure 
PAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQSKAWNDLKTVTTDLQEK
CCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TRALISFTAPFAMKSIVSEPEGIISGDASRSASSGKRRIEIKELATSHQISGEKTDVNKQ
HHHHHHEHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCC
IPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKVSAAGLVNTGLVKVDGDNYVLTLTATFS
CCCCEEEEECCCCCCEEEECCCHHHHHHHHHHEEECCEEECCEEEECCCCEEEEEEEEEC
GKDRKLKFEDSNGVLQAANLVGATEPADPPKELNFLPEKDQIQIFQPEKYGISSDSKPVF
CCCCEEEEECCCCEEEEHHHCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCC
KEESGKKWMEIASVASFQFGIPTTEFKKNTKIELATSTEFAPEEKIELGILYKENDKEKM
CCCCCCHHHHHHHHHHEECCCCCHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCEE
IFETASKENGKVVLNLKNFPSGQKVHKILLANSSGKTIILDSFHIIIPGEFKGAKPSKEI
EEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCHHHH
AEAKDAVFLVDGIEVNRPKNEGLTDVLDGVSLNLHKKTEGPVNIDIKTDSDKGIEMIKEF
HHCCCCEEEEECEEECCCCCCCHHHHHCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHH
VAAYNTVLKFSKESTAVDKNSTVRDGKEEGGEIGQSFWEGKTKTGLLSGEHTVIRLIAGM
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHH
KTVASSSYPVSGENSVRMLSDIGINTGKVGSKWADIQDGFLILDEDKLRSKLAENPDSVR
HHHCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCHHHHH
NLFAIDTNSDARMDTGVGVDLLEHIKPYTQYAGGLVSGKVKMLEEQVADNNKKIKEFENH
EEEEEECCCCCCCCCCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
LVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGARNE
HHHHHHHHHHHHHHHHCCCCCCCEEEHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10708388 [H]