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The map label for this gene is nifU

Identifier: 45656533

GI number: 45656533

Start: 774064

End: 774498

Strand: Direct

Name: nifU

Synonym: LIC10635

Alternate gene names: 45656533

Gene position: 774064-774498 (Clockwise)

Preceding gene: 45656532

Following gene: 45656534

Centisome position: 18.1

GC content: 39.54

Gene sequence:

>435_bases
GTGTCCTTAAGCGATAGTTTATATAAAGAAGTAATTCTAGATCATTATCAAAACCCTAGATTTCGGGGAAAACTGGAATC
TGCCGATTTATACGAACATGGGATCAATCCACTTTGTGGAGATGAGCTCGAGCTAACGATCAATTTGGACGGAAATCGAA
TTACAGAAATTCGTGTGACTGGAAAGGGTTGTTCCATTTCACAAGCGTCCGGTTCTATGATGGCAGAATCGATTTATGGG
AAAACCATAGCCGAAGCCAAGGACATAATATTACGTTTTAAGAATATGATTTTAGAGGACCAAGATCCTAAATTTGACGA
GGGGCTGGAAGATCTGGAATCGATGGAGTCAGTTAAAAAAATTCCTGCGAGAATTAAATGCGCCGTTCTTCCTTGGAACA
CGTTAGAACGAGCTTTTTTACAATTGTCTAGATGA

Upstream 100 bases:

>100_bases
ATTCCTGGGACTTGTCGGGCGAGTCTTTATCTTTATAATACAAAAGATGACATTGATCGATTGATTCAAGGTCTAATTAA
GGTAAAGGAGATTTTCTCCC

Downstream 100 bases:

>100_bases
ACGTGGTAGTTCCCACAAGTGTTTTACGGTAAAATCCTGGTTTGTAATAGTTCTCGCATTTTGGAAACTAAAGTGTCTCA
ATTCATGAACTCAATGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MSLSDSLYKEVILDHYQNPRFRGKLESADLYEHGINPLCGDELELTINLDGNRITEIRVTGKGCSISQASGSMMAESIYG
KTIAEAKDIILRFKNMILEDQDPKFDEGLEDLESMESVKKIPARIKCAVLPWNTLERAFLQLSR

Sequences:

>Translated_144_residues
MSLSDSLYKEVILDHYQNPRFRGKLESADLYEHGINPLCGDELELTINLDGNRITEIRVTGKGCSISQASGSMMAESIYG
KTIAEAKDIILRFKNMILEDQDPKFDEGLEDLESMESVKKIPARIKCAVLPWNTLERAFLQLSR
>Mature_143_residues
SLSDSLYKEVILDHYQNPRFRGKLESADLYEHGINPLCGDELELTINLDGNRITEIRVTGKGCSISQASGSMMAESIYGK
TIAEAKDIILRFKNMILEDQDPKFDEGLEDLESMESVKKIPARIKCAVLPWNTLERAFLQLSR

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16282; Mature: 16151

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSDSLYKEVILDHYQNPRFRGKLESADLYEHGINPLCGDELELTINLDGNRITEIRVT
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEE
GKGCSISQASGSMMAESIYGKTIAEAKDIILRFKNMILEDQDPKFDEGLEDLESMESVKK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IPARIKCAVLPWNTLERAFLQLSR
CCCCEEEEEECCHHHHHHHHHHCC
>Mature Secondary Structure 
SLSDSLYKEVILDHYQNPRFRGKLESADLYEHGINPLCGDELELTINLDGNRITEIRVT
CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEE
GKGCSISQASGSMMAESIYGKTIAEAKDIILRFKNMILEDQDPKFDEGLEDLESMESVKK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IPARIKCAVLPWNTLERAFLQLSR
CCCCEEEEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]