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The map label for this gene is rpoE [C]

Identifier: 45656457

GI number: 45656457

Start: 684522

End: 685067

Strand: Direct

Name: rpoE [C]

Synonym: LIC10559

Alternate gene names: 45656457

Gene position: 684522-685067 (Clockwise)

Preceding gene: 45656456

Following gene: 45656458

Centisome position: 16.0

GC content: 39.56

Gene sequence:

>546_bases
ATGATGACTGAATCCGAATTTGCTGAAATCGTTAATTCCACTAGGAATACAGTCCTCTCTGCGATTGAAAAAAATCTCGC
AGAGAGGTTTTATTATGCCATAGATGATGTGGCTCAAGAAACGTATTTTCGTGCTTACAAAGCTCTCAAAAAAAATCAAT
TCCGCCAAGAATCTAAACTCAGTACTTGGTTATATACGATTGCTAGAAACGAATCCCTAAGAATGAACGATAAACTTAGA
AAGGAAGAGGCGCGTGCGGAGAAATTGATCAACTCCAAAAAAGAGGAAGACTTTCTCGAAGTCAAATCGAATCTGAACGA
GAACTCCGAACGGAATTCTCAGGAAGTGATTGGATTGTTGCGTTCTCTTTTGATCAAAATTCCGAATAAATATAGAAAGG
TTCTCGAATTCTATCTTGCAGGGTATTCCGAAAAACAGATTTCGGAAACGATGGGAGTTAAACCTGGAACCGTTAAGTCA
AGGGCGGCCAGAGGAAAAGAGATGATGAAGCGAGTCGGCGCTAAGGAGAAATTTTATGAAGAATGA

Upstream 100 bases:

>100_bases
ATGACAAAAAAGGCAGTCGAATTTCATTCGATTCTAACTCCGGAACAAAGAAATCAACTGGTGGATTTAATTACAGAGTT
TCAACAAAAACATCGTCATC

Downstream 100 bases:

>100_bases
CCGGGCTTATTCTATGAAATCAGAAATTCTCAAAAGAAAAAAAGATCCGGATTGGGTAATGCGTATTTCTTCAAACGTAA
TTCAAATGGATCGAAAAGAA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-24 Subunit ECF Subfamily

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MMTESEFAEIVNSTRNTVLSAIEKNLAERFYYAIDDVAQETYFRAYKALKKNQFRQESKLSTWLYTIARNESLRMNDKLR
KEEARAEKLINSKKEEDFLEVKSNLNENSERNSQEVIGLLRSLLIKIPNKYRKVLEFYLAGYSEKQISETMGVKPGTVKS
RAARGKEMMKRVGAKEKFYEE

Sequences:

>Translated_181_residues
MMTESEFAEIVNSTRNTVLSAIEKNLAERFYYAIDDVAQETYFRAYKALKKNQFRQESKLSTWLYTIARNESLRMNDKLR
KEEARAEKLINSKKEEDFLEVKSNLNENSERNSQEVIGLLRSLLIKIPNKYRKVLEFYLAGYSEKQISETMGVKPGTVKS
RAARGKEMMKRVGAKEKFYEE
>Mature_181_residues
MMTESEFAEIVNSTRNTVLSAIEKNLAERFYYAIDDVAQETYFRAYKALKKNQFRQESKLSTWLYTIARNESLRMNDKLR
KEEARAEKLINSKKEEDFLEVKSNLNENSERNSQEVIGLLRSLLIKIPNKYRKVLEFYLAGYSEKQISETMGVKPGTVKS
RAARGKEMMKRVGAKEKFYEE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21219; Mature: 21219

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTESEFAEIVNSTRNTVLSAIEKNLAERFYYAIDDVAQETYFRAYKALKKNQFRQESKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STWLYTIARNESLRMNDKLRKEEARAEKLINSKKEEDFLEVKSNLNENSERNSQEVIGLL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
RSLLIKIPNKYRKVLEFYLAGYSEKQISETMGVKPGTVKSRAARGKEMMKRVGAKEKFYE
HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCC
E
C
>Mature Secondary Structure
MMTESEFAEIVNSTRNTVLSAIEKNLAERFYYAIDDVAQETYFRAYKALKKNQFRQESKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STWLYTIARNESLRMNDKLRKEEARAEKLINSKKEEDFLEVKSNLNENSERNSQEVIGLL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
RSLLIKIPNKYRKVLEFYLAGYSEKQISETMGVKPGTVKSRAARGKEMMKRVGAKEKFYE
HHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA