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The map label for this gene is dbp

Identifier: 45656431

GI number: 45656431

Start: 646592

End: 648151

Strand: Direct

Name: dbp

Synonym: LIC10533

Alternate gene names: 45656431

Gene position: 646592-648151 (Clockwise)

Preceding gene: 45656427

Following gene: 45656434

Centisome position: 15.12

GC content: 35.19

Gene sequence:

>1560_bases
TTGGACGGGTTTAGTCTTTTGAATACTTATCTAACCTTTTTTGCAGGAATCCTCGTTTTGTCCCTTCTTTTTTCCGGTTG
TAAATCTAGAGAAGAGGATCCTGAAGAATTGATTCTTTCTATTCCATCCGATCCGATTAGTTTGGATCCGCTTTTCTCTA
CCGATTTGTCTTCTCGCACGCTCGGAAAATTTTTATATCCGTTTTTATTCCAAAAAGTACAGAACGATAAATCTAACTAT
CAACTTGTAGAATCGTTTCAATTGGTAGGTACCGGAAAAATTCGTTCTCTCAAACTCAAGCTTAGAACGTATACTTTGTC
CAACGGGGAAAAATTAAAAGCAGAACAGGTTCTAGAATCTTTGAATCGGTTAGTGAATACTCCTGGTCCTAGAAAAAGCC
AATACTCTTTTATTAAAGAAATCAACGTTCTTTCGGAAAAAGAAATAGAACTAAAAATTACGGGCGGACTTAGGCACGCA
GTGGATTTACTTTCTTTACCACCTGCTGGAATTGTTTGTTGCAAAACCGCAGATTCAAAAAAATTGGAACCTGAATCGTT
TGAAACATTAGAAAAAAAGAATGTATTGGAGATTCCTAAGGCCGGAAGATACTTTCTGAGAGAGTGGAAAAAAAATAATT
ATATACTTTTAGAAAAAAATCCTTATGTAAACGAAGATCTTCCAAAAAAAATCCGTTTGAGAATTTTGGCTTCCGCTTCT
ACGGGTGTGTTTCTTTTTTCCAAGGGAAGAATGGATCTGATGCGTATTCCAAATTTCTTATTAAAAAATCCTCATATTCA
AAAAGAGAATCTTAGATTTAGAAAAGGAGGAGGTATTCAATACATAGCTATCAATGCGAACGAACCTTGTTTTGATTTGA
ATTTTAGAAAAGCTTTAAATACTTCTGTAGACGCTAATCTAATAATCCAAAAATTATTGGAAGGGAATGCGGATCTAACT
TTTGGTCCGGTTCCTTTGGGAACTATCGGGTTATCTAAAATTAGAAAGATTATAGAGGAGAATCCCGAAATTCTTTCGAT
TCAAAATCATTCTCATAAGAAAGCGAATGAATATCTAAAAAAGTCTTCTTGTTATCCGAAAATTTTAGAAAGAGAAATTG
ATTTTAGAATGAGAGGAGACGAGGAGAATAACGCGAATGGTTTGGCTTTGGTCAGTTTTTTAAACAAACTCGGATTAAAG
GTTAAAATTCGTCCTATGGAAAAAACGACTCTTTATAAAGAAAATTCAGAAGGAAAAGGAGATCTAACGTTACTTTTTTG
GTACGCGGATTTACCGGGGGTTTGGAACTTTATAGATCCCTTATTTTCTGGTAGAGACAAGGGTAATGGCGGAAACAGGG
CGCACTATGAAAATCCGGAACTTGAAAATTTATTTTCCAAGGTTAGAAATTCCGATTCCTTGAGTTTGGAATCGGAAGCG
ACTCAGGCTTTAAGGATTCTTCTCAGAGAAAATCCTTGGATCTTTCTTTGGTCACCATATGAAGCTTTTCTAATATCCGA
AAAAGCAAAACGTTATTCTAATTTGGAGGATTATCTGTAG

Upstream 100 bases:

>100_bases
GCCCCGTTTAAAATTGAGACGAGAAAGGACAGTACGATTCCTAAAGTCAATCTATATTTGTACTTGAAGGAATACTTTAG
GAGCCGTTTATATATGTTCA

Downstream 100 bases:

>100_bases
TTTCTGGAAGTTCTAATTCTACGGAATCTCCGTCTCCATCTTCTGCTTGAGGAAGAGGGTTTGTAGTAGTCCCAGGTTCT
TGGGCGGAAGTTTCCGGAGT

Product: ABC transporter periplasmic dipeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MDGFSLLNTYLTFFAGILVLSLLFSGCKSREEDPEELILSIPSDPISLDPLFSTDLSSRTLGKFLYPFLFQKVQNDKSNY
QLVESFQLVGTGKIRSLKLKLRTYTLSNGEKLKAEQVLESLNRLVNTPGPRKSQYSFIKEINVLSEKEIELKITGGLRHA
VDLLSLPPAGIVCCKTADSKKLEPESFETLEKKNVLEIPKAGRYFLREWKKNNYILLEKNPYVNEDLPKKIRLRILASAS
TGVFLFSKGRMDLMRIPNFLLKNPHIQKENLRFRKGGGIQYIAINANEPCFDLNFRKALNTSVDANLIIQKLLEGNADLT
FGPVPLGTIGLSKIRKIIEENPEILSIQNHSHKKANEYLKKSSCYPKILEREIDFRMRGDEENNANGLALVSFLNKLGLK
VKIRPMEKTTLYKENSEGKGDLTLLFWYADLPGVWNFIDPLFSGRDKGNGGNRAHYENPELENLFSKVRNSDSLSLESEA
TQALRILLRENPWIFLWSPYEAFLISEKAKRYSNLEDYL

Sequences:

>Translated_519_residues
MDGFSLLNTYLTFFAGILVLSLLFSGCKSREEDPEELILSIPSDPISLDPLFSTDLSSRTLGKFLYPFLFQKVQNDKSNY
QLVESFQLVGTGKIRSLKLKLRTYTLSNGEKLKAEQVLESLNRLVNTPGPRKSQYSFIKEINVLSEKEIELKITGGLRHA
VDLLSLPPAGIVCCKTADSKKLEPESFETLEKKNVLEIPKAGRYFLREWKKNNYILLEKNPYVNEDLPKKIRLRILASAS
TGVFLFSKGRMDLMRIPNFLLKNPHIQKENLRFRKGGGIQYIAINANEPCFDLNFRKALNTSVDANLIIQKLLEGNADLT
FGPVPLGTIGLSKIRKIIEENPEILSIQNHSHKKANEYLKKSSCYPKILEREIDFRMRGDEENNANGLALVSFLNKLGLK
VKIRPMEKTTLYKENSEGKGDLTLLFWYADLPGVWNFIDPLFSGRDKGNGGNRAHYENPELENLFSKVRNSDSLSLESEA
TQALRILLRENPWIFLWSPYEAFLISEKAKRYSNLEDYL
>Mature_519_residues
MDGFSLLNTYLTFFAGILVLSLLFSGCKSREEDPEELILSIPSDPISLDPLFSTDLSSRTLGKFLYPFLFQKVQNDKSNY
QLVESFQLVGTGKIRSLKLKLRTYTLSNGEKLKAEQVLESLNRLVNTPGPRKSQYSFIKEINVLSEKEIELKITGGLRHA
VDLLSLPPAGIVCCKTADSKKLEPESFETLEKKNVLEIPKAGRYFLREWKKNNYILLEKNPYVNEDLPKKIRLRILASAS
TGVFLFSKGRMDLMRIPNFLLKNPHIQKENLRFRKGGGIQYIAINANEPCFDLNFRKALNTSVDANLIIQKLLEGNADLT
FGPVPLGTIGLSKIRKIIEENPEILSIQNHSHKKANEYLKKSSCYPKILEREIDFRMRGDEENNANGLALVSFLNKLGLK
VKIRPMEKTTLYKENSEGKGDLTLLFWYADLPGVWNFIDPLFSGRDKGNGGNRAHYENPELENLFSKVRNSDSLSLESEA
TQALRILLRENPWIFLWSPYEAFLISEKAKRYSNLEDYL

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=502, Percent_Identity=23.7051792828685, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59203; Mature: 59203

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGFSLLNTYLTFFAGILVLSLLFSGCKSREEDPEELILSIPSDPISLDPLFSTDLSSRT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCCCCCCCCHHH
LGKFLYPFLFQKVQNDKSNYQLVESFQLVGTGKIRSLKLKLRTYTLSNGEKLKAEQVLES
HHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCEEEEEEEEEEEEECCCCCCCHHHHHHH
LNRLVNTPGPRKSQYSFIKEINVLSEKEIELKITGGLRHAVDLLSLPPAGIVCCKTADSK
HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCC
KLEPESFETLEKKNVLEIPKAGRYFLREWKKNNYILLEKNPYVNEDLPKKIRLRILASAS
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEECC
TGVFLFSKGRMDLMRIPNFLLKNPHIQKENLRFRKGGGIQYIAINANEPCFDLNFRKALN
CCEEEEECCCCHHHHCCHHHHCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHHHHC
TSVDANLIIQKLLEGNADLTFGPVPLGTIGLSKIRKIIEENPEILSIQNHSHKKANEYLK
CCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
KSSCYPKILEREIDFRMRGDEENNANGLALVSFLNKLGLKVKIRPMEKTTLYKENSEGKG
HCCCCHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHEEEECCCCCCC
DLTLLFWYADLPGVWNFIDPLFSGRDKGNGGNRAHYENPELENLFSKVRNSDSLSLESEA
CEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
TQALRILLRENPWIFLWSPYEAFLISEKAKRYSNLEDYL
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure
MDGFSLLNTYLTFFAGILVLSLLFSGCKSREEDPEELILSIPSDPISLDPLFSTDLSSRT
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCCCCCCCCHHH
LGKFLYPFLFQKVQNDKSNYQLVESFQLVGTGKIRSLKLKLRTYTLSNGEKLKAEQVLES
HHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCEEEEEEEEEEEEECCCCCCCHHHHHHH
LNRLVNTPGPRKSQYSFIKEINVLSEKEIELKITGGLRHAVDLLSLPPAGIVCCKTADSK
HHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCEEEEECCCCC
KLEPESFETLEKKNVLEIPKAGRYFLREWKKNNYILLEKNPYVNEDLPKKIRLRILASAS
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEECC
TGVFLFSKGRMDLMRIPNFLLKNPHIQKENLRFRKGGGIQYIAINANEPCFDLNFRKALN
CCEEEEECCCCHHHHCCHHHHCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCHHHHHC
TSVDANLIIQKLLEGNADLTFGPVPLGTIGLSKIRKIIEENPEILSIQNHSHKKANEYLK
CCCCHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
KSSCYPKILEREIDFRMRGDEENNANGLALVSFLNKLGLKVKIRPMEKTTLYKENSEGKG
HCCCCHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHEEEECCCCCCC
DLTLLFWYADLPGVWNFIDPLFSGRDKGNGGNRAHYENPELENLFSKVRNSDSLSLESEA
CEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHH
TQALRILLRENPWIFLWSPYEAFLISEKAKRYSNLEDYL
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]