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The map label for this gene is fecI [C]

Identifier: 45656286

GI number: 45656286

Start: 439864

End: 440412

Strand: Direct

Name: fecI [C]

Synonym: LIC10386

Alternate gene names: 45656286

Gene position: 439864-440412 (Clockwise)

Preceding gene: 45656284

Following gene: 45656287

Centisome position: 10.28

GC content: 31.33

Gene sequence:

>549_bases
GTGGCACATACTTCCGAGTTAGAAAAACTCTATAACCACAATAAAGACGATTTATTTCATTATATAAGAAAATCGTTCTA
TGACGAAAATTCTGCCCAAGATATACTACACGATTCTTTTCTAAATTTTTTTAAATATTATGAGAATAGGGACATTCCAG
ATCCTACTTCTTGCAGGATGATTTTATTTAGAATTGCAAGGAATTTAATTATTAATCATTCTAAATCTTATTATCAGCGA
AATGTATCTCTGGTAGGAGAAGATGCGGGTAGTAGTTTTACGTCTAAATCACCAAGTCCTGAATTTTCAGTGATGGAAAA
AATTGATCAATTGGATGTAAAAAATATCATAGATTCACTCTTAGATACAATTTCTACAGAGTATAAAGAAGCTTTGCTTT
TAAGATACCAACAGGATCTGAAACTGGATGAAATTTCTAAAATTCTTGGAATGAGTATTTCCGGTGTTTCCAGATTGATT
GAAAGAGCTGAGAAAGCTTTAGCTCAAGAAGGTAAAAAAATAGGTTTTCAACCTGCGGATTATATATGA

Upstream 100 bases:

>100_bases
GTTATGATTCTTAGTCATGAAATTTTAAAATTCATCTTTTGTGCAAGAAATTATCTTTTTGCTTGAAAAAACAAGTAGGA
ATTGGTGATTCTTTATTACC

Downstream 100 bases:

>100_bases
TAAAATATTTTTTGATTCCTCTTATAGTCTTAAAAGTGAAGAATTCGGACCACTTTGATAAAAAAAATTAGAAATGGAAA
AAAAAGCTCAAATTGACTCA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MAHTSELEKLYNHNKDDLFHYIRKSFYDENSAQDILHDSFLNFFKYYENRDIPDPTSCRMILFRIARNLIINHSKSYYQR
NVSLVGEDAGSSFTSKSPSPEFSVMEKIDQLDVKNIIDSLLDTISTEYKEALLLRYQQDLKLDEISKILGMSISGVSRLI
ERAEKALAQEGKKIGFQPADYI

Sequences:

>Translated_182_residues
MAHTSELEKLYNHNKDDLFHYIRKSFYDENSAQDILHDSFLNFFKYYENRDIPDPTSCRMILFRIARNLIINHSKSYYQR
NVSLVGEDAGSSFTSKSPSPEFSVMEKIDQLDVKNIIDSLLDTISTEYKEALLLRYQQDLKLDEISKILGMSISGVSRLI
ERAEKALAQEGKKIGFQPADYI
>Mature_181_residues
AHTSELEKLYNHNKDDLFHYIRKSFYDENSAQDILHDSFLNFFKYYENRDIPDPTSCRMILFRIARNLIINHSKSYYQRN
VSLVGEDAGSSFTSKSPSPEFSVMEKIDQLDVKNIIDSLLDTISTEYKEALLLRYQQDLKLDEISKILGMSISGVSRLIE
RAEKALAQEGKKIGFQPADYI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21101; Mature: 20970

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHTSELEKLYNHNKDDLFHYIRKSFYDENSAQDILHDSFLNFFKYYENRDIPDPTSCRM
CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ILFRIARNLIINHSKSYYQRNVSLVGEDAGSSFTSKSPSPEFSVMEKIDQLDVKNIIDSL
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LDTISTEYKEALLLRYQQDLKLDEISKILGMSISGVSRLIERAEKALAQEGKKIGFQPAD
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YI
CC
>Mature Secondary Structure 
AHTSELEKLYNHNKDDLFHYIRKSFYDENSAQDILHDSFLNFFKYYENRDIPDPTSCRM
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ILFRIARNLIINHSKSYYQRNVSLVGEDAGSSFTSKSPSPEFSVMEKIDQLDVKNIIDSL
HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LDTISTEYKEALLLRYQQDLKLDEISKILGMSISGVSRLIERAEKALAQEGKKIGFQPAD
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA