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The map label for this gene is flgC

Identifier: 45656202

GI number: 45656202

Start: 340955

End: 341422

Strand: Reverse

Name: flgC

Synonym: LIC10298

Alternate gene names: 45656202

Gene position: 341422-340955 (Counterclockwise)

Preceding gene: 45656203

Following gene: 45656201

Centisome position: 7.98

GC content: 40.81

Gene sequence:

>468_bases
GTGCCCATGGGACTTTTTTCATCGATCAACATTTCTGCAACCGGCTTATCCGCTCAAAGATTGAGAATGGATGTTATTTC
CAATAATATTGCAAACTCTACTACTACCCGAAACACAAATGGGGACGGCCCTTTTAGAAGAGATAGGGTTGTTATGACTC
CGATCAACCTAAGAACCAAATGGAGAAGCCCTGTTTATCCGTTTGGAGTTTCTCCAGGAGAAGGAAAAGGTGTAAAGGTA
ATGAAAGTCGAAAAGGATATGACCCCTCTTCGATTGGTTTATGATCCAACTCATCCGGACTCGATTCAAATCGGCCCAAA
AAAAGGTTATGTAGAAATGCCAAATGTAAACATCGTTACAGAGATGACAGATATGATTTCCGCTTCCAGATCCTATGAAG
CAAACGTTCAGATGATTAACGGATCAAAAGCGATGTTTAACAAGGCTTTAGAAATAGGTAGGGCTTAA

Upstream 100 bases:

>100_bases
AGAACTACAGAGAACTGAAACAAGTCATGAGAATGGCTTAAAAATTTCGTTTTAATTACTTGAATTGATAATAATGAGAC
ATAATTTTATACATTAGGAA

Downstream 100 bases:

>100_bases
TTATGGAAATCAATTCTAATTCTTCTCTTTGGCATTCGTATAACTCTGGTTATAACGGAAACAAACCTCACCCCTTAAGT
CCGAAAGGAGATCAGGTCAA

Product: flagellar basal body rod protein FlgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MPMGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMTPINLRTKWRSPVYPFGVSPGEGKGVKV
MKVEKDMTPLRLVYDPTHPDSIQIGPKKGYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGRA

Sequences:

>Translated_155_residues
MPMGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMTPINLRTKWRSPVYPFGVSPGEGKGVKV
MKVEKDMTPLRLVYDPTHPDSIQIGPKKGYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGRA
>Mature_154_residues
PMGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMTPINLRTKWRSPVYPFGVSPGEGKGVKVM
KVEKDMTPLRLVYDPTHPDSIQIGPKKGYVEMPNVNIVTEMTDMISASRSYEANVQMINGSKAMFNKALEIGRA

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787314, Length=153, Percent_Identity=35.9477124183007, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 17123; Mature: 16992

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMTPINLRTK
CCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEC
WRSPVYPFGVSPGEGKGVKVMKVEKDMTPLRLVYDPTHPDSIQIGPKKGYVEMPNVNIVT
CCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEECCCCCEEECCCCEEEH
EMTDMISASRSYEANVQMINGSKAMFNKALEIGRA
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCC
>Mature Secondary Structure 
PMGLFSSINISATGLSAQRLRMDVISNNIANSTTTRNTNGDGPFRRDRVVMTPINLRTK
CCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEC
WRSPVYPFGVSPGEGKGVKVMKVEKDMTPLRLVYDPTHPDSIQIGPKKGYVEMPNVNIVT
CCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEECCCCCEEECCCCEEEH
EMTDMISASRSYEANVQMINGSKAMFNKALEIGRA
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]