Click here to switch to the map view.

The map label for this gene is glpQ

Identifier: 45656197

GI number: 45656197

Start: 335804

End: 336799

Strand: Reverse

Name: glpQ

Synonym: LIC10293

Alternate gene names: 45656197

Gene position: 336799-335804 (Counterclockwise)

Preceding gene: 45656199

Following gene: 45656190

Centisome position: 7.87

GC content: 35.24

Gene sequence:

>996_bases
ATGATCAAAAGAATTTCTCAATCAATGAATCTAAAAATTAAAGTGGGTTTTCTCTTAAAACCTTTAGTCGTTTTCATTTT
TTATTTCGGAACAAATTTCTGTTCAAGCTCCTCCATTCTTAATAAACCTCTAAATGGAAGTTTAGATTTACAAGGACATA
GAGGCGCCAGAGGTCTAAAACCTGAAAATACATGGCCCGCTTTTGAAGAGGCAATTCGATACGGAATGACTACTTTAGAA
TTGGATACGGTTCTAACCAAAGATAATAAAATTATCATTCATCACGATTCGTTTACCAATCCTACTATTTGCCAGAAAAA
GGACGGGACTCAAATCGTATCAACTTCGTTATACGAATTAACTCTTTCCGAATTGAAACAACTCGATTGTGGAGCAAAAA
AAAATCCTAAATATTTCGAACAAATTCCAGTTCCTGGAACTGAACTAATTACGATCGAAGAATTTTTTACGCTTGTCGCA
AACGCCGAAAAGAAAAATCCAAACCGAACCAAGTTAAAATTTAACATCGAAACAAAATTTCCAGACGACAGCAATTCTCA
AATTCCAATAGGAAAAGTTAAAGAACACGTAAACTTATTAGTTCAAGCGATAGAAAATGCCAAGGTCACTGATCGGACTA
CAATCCAATCTTTCTATTTACCAGCTCTTACAATTGTAAAAGAGATAAATCCAAAATTGAAAACAAGCGCTCTTTTTTCT
CTCACCTATTTTCAAGGAGCTATGATGAAATTAGGATTCGGAAACGGAACTCGTCAAGACGCTCTCCAAAAAACATTGGA
AGTAAAGGCAGACATCATTTCCCCTTACTTTTTATACGTAACCAAAGAATTCGTGCAGAAAATCCATTCTCATAAAATAT
CTGTGATTCCTTGGACGGTCAACGATGTAGAAGATATGAAAAAGTTGATCGATGCGGGAATAGATGGAATTATCAGCGAC
TATCCGGATCGGCTAGCACATATCATCAAGAATTAA

Upstream 100 bases:

>100_bases
GTAACAGATGTCTTATCAGGGATAGTCAGCAAAATTCATTTGCTGATTCAATAAAGTAAACAAATATAAAATTCTTAAAA
AAAATGCTTTTCTAGAATCA

Downstream 100 bases:

>100_bases
TTATATTCTATTACCACAAAAGCGTTGTATAATATACTTATAAAGAATTTTAAATCGACAAAATGAGTTATAGTAAAAGA
AAATTATCCGTTTATTCTAA

Product: glycerophosphoryl diester phosphodiesterase

Products: alcohol; sn-glycerol 3-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MIKRISQSMNLKIKVGFLLKPLVVFIFYFGTNFCSSSSILNKPLNGSLDLQGHRGARGLKPENTWPAFEEAIRYGMTTLE
LDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQLDCGAKKNPKYFEQIPVPGTELITIEEFFTLVA
NAEKKNPNRTKLKFNIETKFPDDSNSQIPIGKVKEHVNLLVQAIENAKVTDRTTIQSFYLPALTIVKEINPKLKTSALFS
LTYFQGAMMKLGFGNGTRQDALQKTLEVKADIISPYFLYVTKEFVQKIHSHKISVIPWTVNDVEDMKKLIDAGIDGIISD
YPDRLAHIIKN

Sequences:

>Translated_331_residues
MIKRISQSMNLKIKVGFLLKPLVVFIFYFGTNFCSSSSILNKPLNGSLDLQGHRGARGLKPENTWPAFEEAIRYGMTTLE
LDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQLDCGAKKNPKYFEQIPVPGTELITIEEFFTLVA
NAEKKNPNRTKLKFNIETKFPDDSNSQIPIGKVKEHVNLLVQAIENAKVTDRTTIQSFYLPALTIVKEINPKLKTSALFS
LTYFQGAMMKLGFGNGTRQDALQKTLEVKADIISPYFLYVTKEFVQKIHSHKISVIPWTVNDVEDMKKLIDAGIDGIISD
YPDRLAHIIKN
>Mature_331_residues
MIKRISQSMNLKIKVGFLLKPLVVFIFYFGTNFCSSSSILNKPLNGSLDLQGHRGARGLKPENTWPAFEEAIRYGMTTLE
LDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYELTLSELKQLDCGAKKNPKYFEQIPVPGTELITIEEFFTLVA
NAEKKNPNRTKLKFNIETKFPDDSNSQIPIGKVKEHVNLLVQAIENAKVTDRTTIQSFYLPALTIVKEINPKLKTSALFS
LTYFQGAMMKLGFGNGTRQDALQKTLEVKADIISPYFLYVTKEFVQKIHSHKISVIPWTVNDVEDMKKLIDAGIDGIISD
YPDRLAHIIKN

Specific function: Glycerophosphoryl Diester Phosphodiesterase Hydrolyzes Deacylated Phospholipids To G3p And The Corresponding Alcohols. [C]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: 3.1.4.46

Molecular weight: Translated: 37387; Mature: 37387

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRISQSMNLKIKVGFLLKPLVVFIFYFGTNFCSSSSILNKPLNGSLDLQGHRGARGLK
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCCCCCCCC
PENTWPAFEEAIRYGMTTLELDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYEL
CCCCCHHHHHHHHHCCCEEEEEHEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
TLSELKQLDCGAKKNPKYFEQIPVPGTELITIEEFFTLVANAEKKNPNRTKLKFNIETKF
HHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHCCCCCCCCCEEEEEEEEECC
PDDSNSQIPIGKVKEHVNLLVQAIENAKVTDRTTIQSFYLPALTIVKEINPKLKTSALFS
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LTYFQGAMMKLGFGNGTRQDALQKTLEVKADIISPYFLYVTKEFVQKIHSHKISVIPWTV
HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEC
NDVEDMKKLIDAGIDGIISDYPDRLAHIIKN
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKRISQSMNLKIKVGFLLKPLVVFIFYFGTNFCSSSSILNKPLNGSLDLQGHRGARGLK
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCCCCCCCC
PENTWPAFEEAIRYGMTTLELDTVLTKDNKIIIHHDSFTNPTICQKKDGTQIVSTSLYEL
CCCCCHHHHHHHHHCCCEEEEEHEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
TLSELKQLDCGAKKNPKYFEQIPVPGTELITIEEFFTLVANAEKKNPNRTKLKFNIETKF
HHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHCCCCCCCCCEEEEEEEEECC
PDDSNSQIPIGKVKEHVNLLVQAIENAKVTDRTTIQSFYLPALTIVKEINPKLKTSALFS
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LTYFQGAMMKLGFGNGTRQDALQKTLEVKADIISPYFLYVTKEFVQKIHSHKISVIPWTV
HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEC
NDVEDMKKLIDAGIDGIISDYPDRLAHIIKN
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Ca2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.6 {bis(glycerophospho)glycerol}} 0.2 {glycerophosphoethanolamine}} [C]

Substrates: glycerophosphodiester; H2O

Specific reaction: A glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate

General reaction: Hydrolysis of carboxylic diester [C]

Inhibitor: EDTA; Mg2+; Mn2+ [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 8759838 [H]