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The map label for this gene is jag [H]

Identifier: 45656064

GI number: 45656064

Start: 187325

End: 188035

Strand: Direct

Name: jag [H]

Synonym: LIC10158

Alternate gene names: 45656064

Gene position: 187325-188035 (Clockwise)

Preceding gene: 45656063

Following gene: 45656065

Centisome position: 4.38

GC content: 39.38

Gene sequence:

>711_bases
ATGGAAAATTACATCTTTGAAGCCGAGGCTAAATCAAAGTCCGAAGCCGAAGAGTACACTCTCAAAACTCTCCGATTAAA
CTCGGACGAGGTTCGTTTTGAAACCGTAGATTCTGGAAAAGGAGGCTTTTTCGGAATTTCTCAAAAAAAGCCAGCTATCG
TTCGGGCTTACGTTATTTCTAGAGATCTTCCCGCTGAAAAAATCATTCATGGGGTCGTTCTTACCGTTTTGAAAAAGATG
GGGATTGAAGCGGAAGTGGTTGGTATGGGTGACGTGGACGGAAAAATTTACGTCGAAGTTGCCAGTAAAGAGTCCGGGCT
CGTGATCGGAAAAAGAGGATCTACGTTAGACGCAATTCAATTTATCTTGAATTTGATGGTAGATTCCAAGATCAGACATG
GTAGGAAAATTGTTTTGGATATAGAATCTTACAGAGATAAGAGAGAGCTTTCTTTAGTTCGTCTTGGAAAATCTGTTGCT
GCAACTGTCGCCAAAACCGGCAAATCAAAATTATTGGAACCGATGAATCCTTTTGAAAGAAGGATTATTCACATGGCTCT
TCAAGAAAATGAAAAAGTTTTTACTAGATCGGAAGGAAACGGTACTTACAAAAAAGTAAGAATCATTCCGATGAAAGATA
AACACAAATACAAAGACGTTGTCGAAAAAGGTCCAAACAACGACCTTCTCGAAGAAGTGAACTTTGAATGA

Upstream 100 bases:

>100_bases
TCTATTGGTCAACAGTGGATTACAAATCATCTAAAAAAAACCGAAGAAAAGAAAAAAGCGAAAGTTTAATCGCAACGAAC
TCATTATCGAGGATATACAC

Downstream 100 bases:

>100_bases
TACGATAGCCGCTGTATCTACTTCTTCCGGTGCCGGAGCCATCGGAATCATCCGAATGTCCGGTCCGGAAGCGCTTACGA
TTTCCTCTTCTTTTCTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MENYIFEAEAKSKSEAEEYTLKTLRLNSDEVRFETVDSGKGGFFGISQKKPAIVRAYVISRDLPAEKIIHGVVLTVLKKM
GIEAEVVGMGDVDGKIYVEVASKESGLVIGKRGSTLDAIQFILNLMVDSKIRHGRKIVLDIESYRDKRELSLVRLGKSVA
ATVAKTGKSKLLEPMNPFERRIIHMALQENEKVFTRSEGNGTYKKVRIIPMKDKHKYKDVVEKGPNNDLLEEVNFE

Sequences:

>Translated_236_residues
MENYIFEAEAKSKSEAEEYTLKTLRLNSDEVRFETVDSGKGGFFGISQKKPAIVRAYVISRDLPAEKIIHGVVLTVLKKM
GIEAEVVGMGDVDGKIYVEVASKESGLVIGKRGSTLDAIQFILNLMVDSKIRHGRKIVLDIESYRDKRELSLVRLGKSVA
ATVAKTGKSKLLEPMNPFERRIIHMALQENEKVFTRSEGNGTYKKVRIIPMKDKHKYKDVVEKGPNNDLLEEVNFE
>Mature_236_residues
MENYIFEAEAKSKSEAEEYTLKTLRLNSDEVRFETVDSGKGGFFGISQKKPAIVRAYVISRDLPAEKIIHGVVLTVLKKM
GIEAEVVGMGDVDGKIYVEVASKESGLVIGKRGSTLDAIQFILNLMVDSKIRHGRKIVLDIESYRDKRELSLVRLGKSVA
ATVAKTGKSKLLEPMNPFERRIIHMALQENEKVFTRSEGNGTYKKVRIIPMKDKHKYKDVVEKGPNNDLLEEVNFE

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 26560; Mature: 26560

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENYIFEAEAKSKSEAEEYTLKTLRLNSDEVRFETVDSGKGGFFGISQKKPAIVRAYVIS
CCCEEEECCCCCCHHHHHHEEEEEEECCCCEEEEEECCCCCCEEECCCCCCCEEEEEECC
RDLPAEKIIHGVVLTVLKKMGIEAEVVGMGDVDGKIYVEVASKESGLVIGKRGSTLDAIQ
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEECCCCHHHHHH
FILNLMVDSKIRHGRKIVLDIESYRDKRELSLVRLGKSVAATVAKTGKSKLLEPMNPFER
HHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHH
RIIHMALQENEKVFTRSEGNGTYKKVRIIPMKDKHKYKDVVEKGPNNDLLEEVNFE
HHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCC
>Mature Secondary Structure
MENYIFEAEAKSKSEAEEYTLKTLRLNSDEVRFETVDSGKGGFFGISQKKPAIVRAYVIS
CCCEEEECCCCCCHHHHHHEEEEEEECCCCEEEEEECCCCCCEEECCCCCCCEEEEEECC
RDLPAEKIIHGVVLTVLKKMGIEAEVVGMGDVDGKIYVEVASKESGLVIGKRGSTLDAIQ
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCCEEEECCCCHHHHHH
FILNLMVDSKIRHGRKIVLDIESYRDKRELSLVRLGKSVAATVAKTGKSKLLEPMNPFER
HHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHH
RIIHMALQENEKVFTRSEGNGTYKKVRIIPMKDKHKYKDVVEKGPNNDLLEEVNFE
HHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]