Click here to switch to the map view.

The map label for this gene is 45656048

Identifier: 45656048

GI number: 45656048

Start: 164349

End: 165818

Strand: Direct

Name: 45656048

Synonym: LIC10138

Alternate gene names: NA

Gene position: 164349-165818 (Clockwise)

Preceding gene: 45656047

Following gene: 45656049

Centisome position: 3.84

GC content: 34.63

Gene sequence:

>1470_bases
ATGGACGCGCAGAAAGACTTACAAAAATTCGATTTTACAGAAGAAATCATCCAGCATTTTAAAATTAACAGCGTAATTCC
CGTTGATTTTTATAATAGAAACGGACAGATTTTAATTCATAAAAAGGAAAATGCAGACGGAGATGACATTACAAAATTAT
TAAGATTCGAGAGCCAGGGAATTTACTTTTTAAAATCCGAATTCGAAAAGATTTCCGGCGGAAAACAAGGTGATGGGCCA
AATAATGTAAATGGTCGAGACGTTAGTTTTGCCAAACTAGTCAATGCCGAGTTAACCGTAGATCTTGCTAAGAACGCTTC
CAATTTTTTATCCGAATTAAAAAAATTTCCCCTTCATGGAAATCAGTTAAGACATCTAAATAAGTCCATAGACGGAATAT
TAGAAGATTTTAAATCAACTCCAGACATGGAAACCGGATTGGTTAACATCATAGAAGTTATGAGTAGCGCAGGGGTTCCT
ATGGATTCCGAAATACTTACAAAACGCACCGTGATTTCAATGGCTATGAAAGTGAGAGCCGGAAAAGCTTTTACTAAGGT
GGACATGGAACAGAAAAAATTAGATCAAATGAATCTAATGATGTCTTCTTATCTTGCGGATGTGGGCTACACTCAGATGA
AAATTCCGATGGAGAGAGATCTGAAAGCGGAAGAATTTGAATATATTAAAAACCATCCAATTATTAGTTATCTTATGATA
GCAAATCTTCCGGACTTGGACGATAATATTAAAACTTTGGTTCTCAATCATCACCGTCCTCATAAAGGGGAAGGAATGAA
TAATAACTATCCTCAACCAAAAGTTCTTATTCATAAGCTCAACGTTTATAAGGAAAAGTATAAGGACGATCCTAAAAAAA
CCGTTTTGGTTGCAGATATTCAAAAACAAATTCGGAATATTCTTACCAACAATCTTCCTATGGAAGATATTGGGGTTATT
TCCATTGCGGGAGAATTTGCATCCTTGACGACAAGACAAGCGTGGAGAGAAGCTTTTGATCCTTTGGTTGCAATGAAATT
AATTTTGAATAACAGTTTTTTTGCATATAATGAAAAGACCTTGAGAGACTTTTACGATCATATTGGTCTTTCATTGTGTA
ATAATCAGCCTTTTATTCGGGAAGGTGACTTTGTGATTGTGGTCACACAAGATTCTAATCAAAAAGTTTTTTTTGAAGTT
TGTATTATTCGAGAAATGTATAAAACTCAAATTCGTCCTATGTTAGAAAGAATAGGAACCATTAAACCTAACTTTAGTAA
TATGGGTAAACTTAGAATTTCAGGATTTGATATTGCTTCTTTAAAGTTGGATCGTAGAAAAGCGGTTTACAATCTCGAAA
AAAACCAAGACCCGAGAAGGATCGTTTACGTTTTGGATTCTAATATGGACGCTCGTCTTTATGAGGAATTAACTAAACAA
ACCGGCGAAATTCCTAAAGAAAGTGCTTAA

Upstream 100 bases:

>100_bases
TTCATGGATTAAAAATGAAATTCTTAAGCGATTATTTTAATCTACGTTAATTAGCGTAGCTATATTCAAAAAGTAAAATT
CACTATTTAAGATTATTCTT

Downstream 100 bases:

>100_bases
AAACCGAGTTACGGAATTAAGGAATCTGCGAACTTTAGTTAATTTAAATATAGTAATGTTTAAATTAAATTTTCACACAA
AACCTCTATTTTGAGACCAT

Product: HD-GYP hydrolase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MDAQKDLQKFDFTEEIIQHFKINSVIPVDFYNRNGQILIHKKENADGDDITKLLRFESQGIYFLKSEFEKISGGKQGDGP
NNVNGRDVSFAKLVNAELTVDLAKNASNFLSELKKFPLHGNQLRHLNKSIDGILEDFKSTPDMETGLVNIIEVMSSAGVP
MDSEILTKRTVISMAMKVRAGKAFTKVDMEQKKLDQMNLMMSSYLADVGYTQMKIPMERDLKAEEFEYIKNHPIISYLMI
ANLPDLDDNIKTLVLNHHRPHKGEGMNNNYPQPKVLIHKLNVYKEKYKDDPKKTVLVADIQKQIRNILTNNLPMEDIGVI
SIAGEFASLTTRQAWREAFDPLVAMKLILNNSFFAYNEKTLRDFYDHIGLSLCNNQPFIREGDFVIVVTQDSNQKVFFEV
CIIREMYKTQIRPMLERIGTIKPNFSNMGKLRISGFDIASLKLDRRKAVYNLEKNQDPRRIVYVLDSNMDARLYEELTKQ
TGEIPKESA

Sequences:

>Translated_489_residues
MDAQKDLQKFDFTEEIIQHFKINSVIPVDFYNRNGQILIHKKENADGDDITKLLRFESQGIYFLKSEFEKISGGKQGDGP
NNVNGRDVSFAKLVNAELTVDLAKNASNFLSELKKFPLHGNQLRHLNKSIDGILEDFKSTPDMETGLVNIIEVMSSAGVP
MDSEILTKRTVISMAMKVRAGKAFTKVDMEQKKLDQMNLMMSSYLADVGYTQMKIPMERDLKAEEFEYIKNHPIISYLMI
ANLPDLDDNIKTLVLNHHRPHKGEGMNNNYPQPKVLIHKLNVYKEKYKDDPKKTVLVADIQKQIRNILTNNLPMEDIGVI
SIAGEFASLTTRQAWREAFDPLVAMKLILNNSFFAYNEKTLRDFYDHIGLSLCNNQPFIREGDFVIVVTQDSNQKVFFEV
CIIREMYKTQIRPMLERIGTIKPNFSNMGKLRISGFDIASLKLDRRKAVYNLEKNQDPRRIVYVLDSNMDARLYEELTKQ
TGEIPKESA
>Mature_489_residues
MDAQKDLQKFDFTEEIIQHFKINSVIPVDFYNRNGQILIHKKENADGDDITKLLRFESQGIYFLKSEFEKISGGKQGDGP
NNVNGRDVSFAKLVNAELTVDLAKNASNFLSELKKFPLHGNQLRHLNKSIDGILEDFKSTPDMETGLVNIIEVMSSAGVP
MDSEILTKRTVISMAMKVRAGKAFTKVDMEQKKLDQMNLMMSSYLADVGYTQMKIPMERDLKAEEFEYIKNHPIISYLMI
ANLPDLDDNIKTLVLNHHRPHKGEGMNNNYPQPKVLIHKLNVYKEKYKDDPKKTVLVADIQKQIRNILTNNLPMEDIGVI
SIAGEFASLTTRQAWREAFDPLVAMKLILNNSFFAYNEKTLRDFYDHIGLSLCNNQPFIREGDFVIVVTQDSNQKVFFEV
CIIREMYKTQIRPMLERIGTIKPNFSNMGKLRISGFDIASLKLDRRKAVYNLEKNQDPRRIVYVLDSNMDARLYEELTKQ
TGEIPKESA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56134; Mature: 56134

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAQKDLQKFDFTEEIIQHFKINSVIPVDFYNRNGQILIHKKENADGDDITKLLRFESQG
CCCHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCC
IYFLKSEFEKISGGKQGDGPNNVNGRDVSFAKLVNAELTVDLAKNASNFLSELKKFPLHG
EEEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCC
NQLRHLNKSIDGILEDFKSTPDMETGLVNIIEVMSSAGVPMDSEILTKRTVISMAMKVRA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GKAFTKVDMEQKKLDQMNLMMSSYLADVGYTQMKIPMERDLKAEEFEYIKNHPIISYLMI
CCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCHHHHHHHHCCCCEEHHHH
ANLPDLDDNIKTLVLNHHRPHKGEGMNNNYPQPKVLIHKLNVYKEKYKDDPKKTVLVADI
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEHHHH
QKQIRNILTNNLPMEDIGVISIAGEFASLTTRQAWREAFDPLVAMKLILNNSFFAYNEKT
HHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
LRDFYDHIGLSLCNNQPFIREGDFVIVVTQDSNQKVFFEVCIIREMYKTQIRPMLERIGT
HHHHHHHHCCEECCCCCCEECCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
IKPNFSNMGKLRISGFDIASLKLDRRKAVYNLEKNQDPRRIVYVLDSNMDARLYEELTKQ
CCCCCCCCCEEEECCCEEEEEEEHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
TGEIPKESA
HCCCCCCCC
>Mature Secondary Structure
MDAQKDLQKFDFTEEIIQHFKINSVIPVDFYNRNGQILIHKKENADGDDITKLLRFESQG
CCCHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCC
IYFLKSEFEKISGGKQGDGPNNVNGRDVSFAKLVNAELTVDLAKNASNFLSELKKFPLHG
EEEEHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCC
NQLRHLNKSIDGILEDFKSTPDMETGLVNIIEVMSSAGVPMDSEILTKRTVISMAMKVRA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GKAFTKVDMEQKKLDQMNLMMSSYLADVGYTQMKIPMERDLKAEEFEYIKNHPIISYLMI
CCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCHHHHHHHHCCCCEEHHHH
ANLPDLDDNIKTLVLNHHRPHKGEGMNNNYPQPKVLIHKLNVYKEKYKDDPKKTVLVADI
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEHHHH
QKQIRNILTNNLPMEDIGVISIAGEFASLTTRQAWREAFDPLVAMKLILNNSFFAYNEKT
HHHHHHHHHCCCCHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH
LRDFYDHIGLSLCNNQPFIREGDFVIVVTQDSNQKVFFEVCIIREMYKTQIRPMLERIGT
HHHHHHHHCCEECCCCCCEECCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
IKPNFSNMGKLRISGFDIASLKLDRRKAVYNLEKNQDPRRIVYVLDSNMDARLYEELTKQ
CCCCCCCCCEEEECCCEEEEEEEHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
TGEIPKESA
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA