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The map label for this gene is 45656018

Identifier: 45656018

GI number: 45656018

Start: 127043

End: 127711

Strand: Reverse

Name: 45656018

Synonym: LIC10107

Alternate gene names: NA

Gene position: 127711-127043 (Counterclockwise)

Preceding gene: 45656019

Following gene: 45656017

Centisome position: 2.99

GC content: 36.32

Gene sequence:

>669_bases
TTGATTCGAACTCTTCTTTTTGAATTTCCTTTAACTACCTTTTTCGTTTTTTTAATGGTAGCGACTTTTTTTATCGTGAA
CGTTTTTCTTCCTGAACATTTAATTCGACAATATTTTTTAAATCATCCGGGACAAATTCAACCTCTCTCTTGGATTGGAG
CCGTGTTCTATCACGGAAATTTAATACATCTATTTGGAAATATGTTTTATCTTTTTTTCCTTGGAAGAGCAGTAGAATAT
AAAGCCGGAAAAGGAAGATGGCTTTTGTTTTTTTTTATGGCAGCTTTGATCTCTTCTTTGTTGGATTCTTTCATCCGAGG
AGTGATCTTGCATGACCCCACTCCAGTTGTAGGTGCATCCGGCGCGATCTCCGGAATCGCCGCAGTAGCCGCACTACTTT
CTCCTTTTTCACTTCGTTTTAATCAAAGAAACATTCCATTTCCGGTTTTTTTAGTCGCTTGGATTATGGTTTACTCGGAC
ATTACCAATGTCTTTACGGAAGACGGGGTAGCACGTTGGGCGCATTTAGGCGGTTTTATTTCTGTAATTTTTGCGGCCTA
TTTTCTAAAACCGACGGAAAGAAAACAACTTCATTCTGGTTTTATACTTAATTTAATATTCATTATTTTAACTTTGATTC
TTGCATTTTTTTATTCAAATCGATCTTAG

Upstream 100 bases:

>100_bases
AACCAAAGGGATCAAAAATTTTCAAATAGAATGATTATCAAGTTAAAAATCATTTTAAATTCTTATTTAATTTATTATTT
CCTGAGAGGACAAAAACACT

Downstream 100 bases:

>100_bases
AATTTAACTCGCTGGTTTGATAAAAGAAACATTTTCAAATCAATGATCAAACAACTTTATCAATACTTGATTTTATAGAT
CCAAGTAAAAACAGAAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQYFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEY
KAGKGRWLLFFFMAALISSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVYSD
ITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFFYSNRS

Sequences:

>Translated_222_residues
MIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQYFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEY
KAGKGRWLLFFFMAALISSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVYSD
ITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFFYSNRS
>Mature_222_residues
MIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQYFLNHPGQIQPLSWIGAVFYHGNLIHLFGNMFYLFFLGRAVEY
KAGKGRWLLFFFMAALISSLLDSFIRGVILHDPTPVVGASGAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVYSD
ITNVFTEDGVARWAHLGGFISVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFFYSNRS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25290; Mature: 25290

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQYFLNHPGQIQPLSWIGAVFYHGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
LIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALISSLLDSFIRGVILHDPTPVVGAS
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCC
GAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVYSDITNVFTEDGVARWAHLGGFI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFFYSNRS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRTLLFEFPLTTFFVFLMVATFFIVNVFLPEHLIRQYFLNHPGQIQPLSWIGAVFYHGN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
LIHLFGNMFYLFFLGRAVEYKAGKGRWLLFFFMAALISSLLDSFIRGVILHDPTPVVGAS
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCCCCCCCC
GAISGIAAVAALLSPFSLRFNQRNIPFPVFLVAWIMVYSDITNVFTEDGVARWAHLGGFI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVIFAAYFLKPTERKQLHSGFILNLIFIILTLILAFFYSNRS
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA