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The map label for this gene is oprF [H]

Identifier: 45655964

GI number: 45655964

Start: 60404

End: 62467

Strand: Reverse

Name: oprF [H]

Synonym: LIC10050

Alternate gene names: 45655964

Gene position: 62467-60404 (Counterclockwise)

Preceding gene: 45655966

Following gene: 45655963

Centisome position: 1.46

GC content: 36.0

Gene sequence:

>2064_bases
ATGCGTCCTTTTTCTAAATTAATTTTTATTCTGGCCTTTTGTATTTTTTTGCCCGTTTTCTCTCAACCTCTACCGGACCT
TCCGGAAAAACAATTTGGTCAACCTCTTAATACACAAAACGACGAATACAATCCTATAGTAAGCCCAGATGGAAGATACA
TCGTATTCCAGTCCAACCGTCCAGGCGGAGAAGGAGGAATGGACATTTGGATTTCCGAGAACATTCGCTTTTTAGATAAG
GAGATACCAGCAGAATGGACTAAACCCGTAAATATGAATCAAAATATTTGGGAAGAATTAAAACGTCCACCAGCTGCTGG
AGTTCGTAAACCAAATCTATTCAACTCTAACGCGTTTGAAGGTGGAATTTCAATTCTTTTCGATTCTAACAACGCGCCTT
CGGAAATTTATTTTACTTCTACAATTAACCTTGCTGTTGGGCGTTCCGGTTTTGAAGGTTTGAATATTTATAGAACAATT
AAAGATAAAAAAACAGGAAGATGGACAGACCCAGAACATCTCAGTGAAATTAATTCCAACTTCAATGATAAGATGCCCGC
AATTTCTCCCGATGGAAATTTTTTGATCTTCTCTTCGGACCGTCCGGGGGGTTACGGTGATTTCGATCTTTGGATCTCGG
TTCGTAATCCAAAAAACGGAAGTTGGTCCCAACCTAAAAATTTAGGTTCTCCCCTCAACTCTTCCGAAAGTGAAATTCTT
CCTTTCATTCATCAAGACGGAGAACAACTTTATTTCAGTTCTAATCGAGAAGACGAAAGAAAAAAATTTAAGATTTTTAG
AATATTCTTAAAATATAAATCTGCTCTAGACAACATGTTAGAAGACGAAGAAGAAACCGAAGAAATTCCTACAACCAAAC
CAACTGAAATCTTAATTCCTAAAATTGATCAATCTTCTTTATTACTTCTTCCCAAACCGTTTAACACTGATAAGTGGGAA
GGTTTTGATAACGAAGGAATCAATTTTGACAAAGACGGTATCTGGGCTTATATTTCTTCCAATCGTTCTGGTGGAGAAGG
TCAATTTGACATTTTCCGCTTTCAAGTTCCGGAATCTATTCGCAACTCCTATACTTTAAACTTCAAAGGTCTAGTTTTGG
ATGGTTCCGAAAAGACAATGATTGGATTAGATTCTACTTTAAAAATTTATGATGGAACTAAACCGGCTAACGTAATCACT
TCGAAAAGAATCGGAGGAGATCTTAGCAAAGGAAAACCTTCTAATTTTGCAACAACTCTTCAAACCGGAAAGGTTTATAA
AATAGAAATTAGTTCTCCTGGCTTTCATCCTCAAGAGGATATTTTGGATTTAAGAGGAAACATAGGTAAAAATCGAAAAG
TTTATAGAACCTACGTTCTTTTACCAATTCAAGTTGGAGAAGGTAAAACGGAAGAAACAAAAATAGAACAACCCATAGAG
AATCAAAAACCAAATTCTGCCGCGTTGAAAGTCATCGTAGCAGACGCATCTACAAAACAAATCATACCAGACGCTAAAGT
TACTCTTTTTACACCTATGAACCGCAAAGGAGAATCTCTTGTCCAAGATGCGGATAAAAAATCTTTTCTTATTAAAAAAT
TACCAGATAACGATTTTGAATTATTTGCAACAGCTTCGAAATATATTTCTGAAAGTATCAATATTATTCAAAAAAATATT
TCCAAAAATGGAACTGTAACAATTTATCTGAAAGCAGAAAGCGACGTAGATCCGGTTTATAATCTACGAGTTTATTTCGA
ATTTAATAAAACAAAAATCACAGAAGAGAATAAAAAGTTGCTAGATCCTCTTGTAGGCTATCTTTTGAAAAATGCGTCCG
ATAAAATTGAAATTGGGGGACATACCGACAACGTAGCCTCTAAGGAATATAACACAAGATTGAGTGCCAAAAGAGCCCGT
AACGTTTACGAGTATCTTCTTTCAAAAGGAATTCCGGAGAAAAGAATGAGAATCAGGGCTTATTGGTATTCACAACCGGA
TGCAGACAATGAGACAGAAACCGGAAGAGCAAAAAATAGAAGAGTTGGTTTTAGAAAGCTCTGA

Upstream 100 bases:

>100_bases
TTTCCATCTTTAAAAACTTAGATATAAGACCGATACTCTAAGTAAGATCCTGAATTTAAACTAAAAACAATAATCTTTAT
ATTCTTTTCGGAGCGGGTTC

Downstream 100 bases:

>100_bases
GGAGTTTTCATGAGCGTACAATTTCAAACCCACATGCAAGCTCAAAGATCTTGGGAAACGATCCAAGATGTGAATAAGAT
AAAGTATATTCTCAAGGAAT

Product: peptidoglycan-associated cytoplasmic membrane protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 687; Mature: 687

Protein sequence:

>687_residues
MRPFSKLIFILAFCIFLPVFSQPLPDLPEKQFGQPLNTQNDEYNPIVSPDGRYIVFQSNRPGGEGGMDIWISENIRFLDK
EIPAEWTKPVNMNQNIWEELKRPPAAGVRKPNLFNSNAFEGGISILFDSNNAPSEIYFTSTINLAVGRSGFEGLNIYRTI
KDKKTGRWTDPEHLSEINSNFNDKMPAISPDGNFLIFSSDRPGGYGDFDLWISVRNPKNGSWSQPKNLGSPLNSSESEIL
PFIHQDGEQLYFSSNREDERKKFKIFRIFLKYKSALDNMLEDEEETEEIPTTKPTEILIPKIDQSSLLLLPKPFNTDKWE
GFDNEGINFDKDGIWAYISSNRSGGEGQFDIFRFQVPESIRNSYTLNFKGLVLDGSEKTMIGLDSTLKIYDGTKPANVIT
SKRIGGDLSKGKPSNFATTLQTGKVYKIEISSPGFHPQEDILDLRGNIGKNRKVYRTYVLLPIQVGEGKTEETKIEQPIE
NQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKKLPDNDFELFATASKYISESINIIQKNI
SKNGTVTIYLKAESDVDPVYNLRVYFEFNKTKITEENKKLLDPLVGYLLKNASDKIEIGGHTDNVASKEYNTRLSAKRAR
NVYEYLLSKGIPEKRMRIRAYWYSQPDADNETETGRAKNRRVGFRKL

Sequences:

>Translated_687_residues
MRPFSKLIFILAFCIFLPVFSQPLPDLPEKQFGQPLNTQNDEYNPIVSPDGRYIVFQSNRPGGEGGMDIWISENIRFLDK
EIPAEWTKPVNMNQNIWEELKRPPAAGVRKPNLFNSNAFEGGISILFDSNNAPSEIYFTSTINLAVGRSGFEGLNIYRTI
KDKKTGRWTDPEHLSEINSNFNDKMPAISPDGNFLIFSSDRPGGYGDFDLWISVRNPKNGSWSQPKNLGSPLNSSESEIL
PFIHQDGEQLYFSSNREDERKKFKIFRIFLKYKSALDNMLEDEEETEEIPTTKPTEILIPKIDQSSLLLLPKPFNTDKWE
GFDNEGINFDKDGIWAYISSNRSGGEGQFDIFRFQVPESIRNSYTLNFKGLVLDGSEKTMIGLDSTLKIYDGTKPANVIT
SKRIGGDLSKGKPSNFATTLQTGKVYKIEISSPGFHPQEDILDLRGNIGKNRKVYRTYVLLPIQVGEGKTEETKIEQPIE
NQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKKLPDNDFELFATASKYISESINIIQKNI
SKNGTVTIYLKAESDVDPVYNLRVYFEFNKTKITEENKKLLDPLVGYLLKNASDKIEIGGHTDNVASKEYNTRLSAKRAR
NVYEYLLSKGIPEKRMRIRAYWYSQPDADNETETGRAKNRRVGFRKL
>Mature_687_residues
MRPFSKLIFILAFCIFLPVFSQPLPDLPEKQFGQPLNTQNDEYNPIVSPDGRYIVFQSNRPGGEGGMDIWISENIRFLDK
EIPAEWTKPVNMNQNIWEELKRPPAAGVRKPNLFNSNAFEGGISILFDSNNAPSEIYFTSTINLAVGRSGFEGLNIYRTI
KDKKTGRWTDPEHLSEINSNFNDKMPAISPDGNFLIFSSDRPGGYGDFDLWISVRNPKNGSWSQPKNLGSPLNSSESEIL
PFIHQDGEQLYFSSNREDERKKFKIFRIFLKYKSALDNMLEDEEETEEIPTTKPTEILIPKIDQSSLLLLPKPFNTDKWE
GFDNEGINFDKDGIWAYISSNRSGGEGQFDIFRFQVPESIRNSYTLNFKGLVLDGSEKTMIGLDSTLKIYDGTKPANVIT
SKRIGGDLSKGKPSNFATTLQTGKVYKIEISSPGFHPQEDILDLRGNIGKNRKVYRTYVLLPIQVGEGKTEETKIEQPIE
NQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKKLPDNDFELFATASKYISESINIIQKNI
SKNGTVTIYLKAESDVDPVYNLRVYFEFNKTKITEENKKLLDPLVGYLLKNASDKIEIGGHTDNVASKEYNTRLSAKRAR
NVYEYLLSKGIPEKRMRIRAYWYSQPDADNETETGRAKNRRVGFRKL

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 77952; Mature: 77952

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPFSKLIFILAFCIFLPVFSQPLPDLPEKQFGQPLNTQNDEYNPIVSPDGRYIVFQSNR
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCEECCCCCEEEEECCC
PGGEGGMDIWISENIRFLDKEIPAEWTKPVNMNQNIWEELKRPPAAGVRKPNLFNSNAFE
CCCCCCEEEEEECCCEEEHHHCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
GGISILFDSNNAPSEIYFTSTINLAVGRSGFEGLNIYRTIKDKKTGRWTDPEHLSEINSN
CCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCC
FNDKMPAISPDGNFLIFSSDRPGGYGDFDLWISVRNPKNGSWSQPKNLGSPLNSSESEIL
CCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCC
PFIHQDGEQLYFSSNREDERKKFKIFRIFLKYKSALDNMLEDEEETEEIPTTKPTEILIP
CCEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEE
KIDQSSLLLLPKPFNTDKWEGFDNEGINFDKDGIWAYISSNRSGGEGQFDIFRFQVPESI
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCHHH
RNSYTLNFKGLVLDGSEKTMIGLDSTLKIYDGTKPANVITSKRIGGDLSKGKPSNFATTL
CCCEEEEEEEEEEECCCCEEEECCCEEEEECCCCCCHHEEHHHCCCCCCCCCCCCCEEEE
QTGKVYKIEISSPGFHPQEDILDLRGNIGKNRKVYRTYVLLPIQVGEGKTEETKIEQPIE
ECCEEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHCCCC
NQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKKLPDNDFE
CCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCE
LFATASKYISESINIIQKNISKNGTVTIYLKAESDVDPVYNLRVYFEFNKTKITEENKKL
EEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCHHHHH
LDPLVGYLLKNASDKIEIGGHTDNVASKEYNTRLSAKRARNVYEYLLSKGIPEKRMRIRA
HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEE
YWYSQPDADNETETGRAKNRRVGFRKL
EEECCCCCCCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MRPFSKLIFILAFCIFLPVFSQPLPDLPEKQFGQPLNTQNDEYNPIVSPDGRYIVFQSNR
CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCEECCCCCEEEEECCC
PGGEGGMDIWISENIRFLDKEIPAEWTKPVNMNQNIWEELKRPPAAGVRKPNLFNSNAFE
CCCCCCEEEEEECCCEEEHHHCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
GGISILFDSNNAPSEIYFTSTINLAVGRSGFEGLNIYRTIKDKKTGRWTDPEHLSEINSN
CCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCC
FNDKMPAISPDGNFLIFSSDRPGGYGDFDLWISVRNPKNGSWSQPKNLGSPLNSSESEIL
CCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCC
PFIHQDGEQLYFSSNREDERKKFKIFRIFLKYKSALDNMLEDEEETEEIPTTKPTEILIP
CCEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEE
KIDQSSLLLLPKPFNTDKWEGFDNEGINFDKDGIWAYISSNRSGGEGQFDIFRFQVPESI
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCHHH
RNSYTLNFKGLVLDGSEKTMIGLDSTLKIYDGTKPANVITSKRIGGDLSKGKPSNFATTL
CCCEEEEEEEEEEECCCCEEEECCCEEEEECCCCCCHHEEHHHCCCCCCCCCCCCCEEEE
QTGKVYKIEISSPGFHPQEDILDLRGNIGKNRKVYRTYVLLPIQVGEGKTEETKIEQPIE
ECCEEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHCCCC
NQKPNSAALKVIVADASTKQIIPDAKVTLFTPMNRKGESLVQDADKKSFLIKKLPDNDFE
CCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCE
LFATASKYISESINIIQKNISKNGTVTIYLKAESDVDPVYNLRVYFEFNKTKITEENKKL
EEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCHHHHH
LDPLVGYLLKNASDKIEIGGHTDNVASKEYNTRLSAKRARNVYEYLLSKGIPEKRMRIRA
HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEE
YWYSQPDADNETETGRAKNRRVGFRKL
EEECCCCCCCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]