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The map label for this gene is rfaH [C]

Identifier: 45655955

GI number: 45655955

Start: 49986

End: 50525

Strand: Reverse

Name: rfaH [C]

Synonym: LIC10041

Alternate gene names: 45655955

Gene position: 50525-49986 (Counterclockwise)

Preceding gene: 45655956

Following gene: 45655954

Centisome position: 1.18

GC content: 33.89

Gene sequence:

>540_bases
ATGATAGAGAATTCTGACGTTAACGAATGGTATGTTCTTTATACCAATCCTAGGTCCGAGAAAAAATTAAAACGATTATT
CCAAGAAAGGAAGATCGAATGTTTTCTTCCTCTCATTTCTAAAAAGAAAAAATGGTCCGATCGTTGGAAGGTTATCGAAG
AACCGATGTATCCTTCTTATATCTTTGTAAAAATTTCATTCTTTAAAGATCGAGTTAGAATTTTACAGTTACCTGGAGCA
CATCATTTTGTATTTTACTTAGGTAAACCATACATCATCCCGGAAGAAGATCTTGATTTAGTACGAACTTTTTTAGAAAC
GTATCCAGATAAAATCCAAGTTGAAATCCAAGAAAAACTTTTGCCGGGTAAAAAGGTTCTCATTCAAGAAGGGCCATTCG
CCGGATTTAAAGCCGAAATTATACAAAGAAAAAATGAAGAACAAATCGTCGTTAAATTCCCCGGAATGAATTTGGTGACA
TCGGTAACTCTGGATATAAAAACGTTAAAATTGGAGGAAACTCTTGGATCCAATTTTTGA

Upstream 100 bases:

>100_bases
TATTCGATCTTTGAAGTCGAATTTAATAGGGCCTTAAGAACTTGGAAATTCGATCTTAAAGAGGGAACAAACCTGATCAT
TCCGGTTTCCTTTAAAATAT

Downstream 100 bases:

>100_bases
AAAGATAGAAAAAGCAATCGATACCGAAATAGAATCCATTCTTTACTTTAGAAAAAATTTAGATCCATCTATTAAACAAG
CAATCGAATTGATTTTAGAA

Product: transcription activator or transcription antitermination factor

Products: NA

Alternate protein names: Transcriptional Regulator; Transcription Antitermination Protein NusG; NGN Domain Protein; Nusg Antitermination Factor; Transcription Antiterminator; Transcriptional Antiterminator; Ngn DomaiN-Containing Protein; Transcription Termination/Antitermination Factor NusG; LPS-Related Regulatory Protein; NusG/RfaH Family Transcriptional Regulator

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIENSDVNEWYVLYTNPRSEKKLKRLFQERKIECFLPLISKKKKWSDRWKVIEEPMYPSYIFVKISFFKDRVRILQLPGA
HHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEKLLPGKKVLIQEGPFAGFKAEIIQRKNEEQIVVKFPGMNLVT
SVTLDIKTLKLEETLGSNF

Sequences:

>Translated_179_residues
MIENSDVNEWYVLYTNPRSEKKLKRLFQERKIECFLPLISKKKKWSDRWKVIEEPMYPSYIFVKISFFKDRVRILQLPGA
HHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEKLLPGKKVLIQEGPFAGFKAEIIQRKNEEQIVVKFPGMNLVT
SVTLDIKTLKLEETLGSNF
>Mature_179_residues
MIENSDVNEWYVLYTNPRSEKKLKRLFQERKIECFLPLISKKKKWSDRWKVIEEPMYPSYIFVKISFFKDRVRILQLPGA
HHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEKLLPGKKVLIQEGPFAGFKAEIIQRKNEEQIVVKFPGMNLVT
SVTLDIKTLKLEETLGSNF

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21243; Mature: 21243

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENSDVNEWYVLYTNPRSEKKLKRLFQERKIECFLPLISKKKKWSDRWKVIEEPMYPSY
CCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEHHHCCCCCCCHHHHHHCCCCCCCE
IFVKISFFKDRVRILQLPGAHHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEKL
EEEEEEEHHCCEEEEECCCCCEEEEECCCCEECCCCCHHHHHHHHHHCCCEEEEEEHHHC
LPGKKVLIQEGPFAGFKAEIIQRKNEEQIVVKFPGMNLVTSVTLDIKTLKLEETLGSNF
CCCCEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEEEEEHHHCCCCC
>Mature Secondary Structure
MIENSDVNEWYVLYTNPRSEKKLKRLFQERKIECFLPLISKKKKWSDRWKVIEEPMYPSY
CCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEHHHCCCCCCCHHHHHHCCCCCCCE
IFVKISFFKDRVRILQLPGAHHFVFYLGKPYIIPEEDLDLVRTFLETYPDKIQVEIQEKL
EEEEEEEHHCCEEEEECCCCCEEEEECCCCEECCCCCHHHHHHHHHHCCCEEEEEEHHHC
LPGKKVLIQEGPFAGFKAEIIQRKNEEQIVVKFPGMNLVTSVTLDIKTLKLEETLGSNF
CCCCEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA