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The map label for this gene is 45655951

Identifier: 45655951

GI number: 45655951

Start: 44852

End: 46465

Strand: Direct

Name: 45655951

Synonym: LIC10037

Alternate gene names: NA

Gene position: 44852-46465 (Clockwise)

Preceding gene: 45655950

Following gene: 45655952

Centisome position: 1.05

GC content: 39.1

Gene sequence:

>1614_bases
ATGGGCGGCATACCAGCAGCGAATGATAAGATTATCACTCCAAAAAAACATAAGGAAATTATAAAAAAAGAAAGTATTAA
AAACGGAATCTGGGAATTGAATTCAGATGTAGTCGTAATTGGTTCAGGCGCAGGTGGTGCAGTTGCGGCTGCAACGCTTG
CAAAGAACGGTTGGAACGTGATTTTAATCGAAGAAGGCTCTTATTTTACTCCGGCTCAGTTTAATGGAAATGAATTTATC
TCCTCTGCTAGATTATATCGTGATGCCGGTTTTATAGTAACTGAGGAACAGACTCTTAGTATTCTTCAAGGTAGAACAAT
AGGCGGTTCCACTACTGTCAACTGGCAGACTTCTCTTTATCCTCCGGATTATGTTACGGAAGAATGGGATCGAAGATTCG
GATTGAAAGGTTATTCTAGAAAGGATATGGATTTTTATATTTCTTCCGTTCACGAAAGATTGGGAGTTCACCCAGTTCCT
CAGAATCTTATCAATGCAAATAATAATATTCTAATGAAAGGCGGAAAATCTTTGGGTCTTGATCCCGAAGTTTTAAATAA
CAATAATAGAGGATGTATTGGTTTAGGAAGATGTGGATTAGGATGTCCGATTAATGCAAAACAATCCATGTTCTTGACGT
ATATCCCAGACGCAATCGAATCTGGTGCGATCGTAATCGCAAATATGAAAGCACAGGTAATTCATGATGGACCTACAAAA
ACGGTAATTGCTGACTTCACCCCTGATCCTTATGAAAAAACACCGGATGTGGTCATTCAAAAACTTAAAATTTCTACAAA
AGTAGTAGTAGTTAGTGCGGGTGCAATCGAAGGACCAGCACTTTTGCAAAGGTCAGGTATAGGTAATGATTGGGTAGGAA
GAAATCTAAAAGTACATCCTACGAGTACAATTTTTGCCGTTTTCAATGAGAAAATCAATATGTATTCAGGCCCTCCACAA
TCTGCGGTTATCAAAGATGGGCATAATCAGGATAATACTGGTTATGGTTTTTGGTTGGAAGTGGCACCTTTCCGTCCTAC
GTTAGTCGCTTCTTTGATTCCTTTTTACGGATCGAAACAATTTGAACAGATCGAAAAATATTCCAATATGAGCGCCGGAA
TCGTATTGGTTCGAGACGGATCTGATGGAGAAGCAAATGCTTCTGTAAAATGGTCTTTAGGAAGAAGGAAAGTTTATTTT
GAGCTTACTTCCGGAGACGGTAAAAATATGCTTCGCGGTTTGAAAATGTTAGCGGAAGTACAGGCTGCAGCTGGAGCCAA
AGAACTTATCTTCCCGTTTACAGATATGGAAACTCCTGTTCTTGTGGATCGTAATACTAAATTTGATTGGGTTTTGGAAA
AAAAGTTCAATCCTGGAAGTTTAGTGGTGGGTTCTGCGCATCCTCATGGATCGATTCAAGCCGCAAATTCTCCTGAAAAA
GGAGCCATAGATTTGAATATGGAGTTGTACGGTCATAAAAATATTTATGTGATGGACGCTTCCGTATATCCGACGGGCCT
TTCTGTCAATCCACAAATTACTACAATGAGTTTGGTGCTTAGAGCTTCTCAAACTCTTGCTTTAAAAAAATCTGAAAAGT
TGAGTCAATTCTAA

Upstream 100 bases:

>100_bases
TATAAAACGAGGAATTTATTCTATTTTAAGACAGACTTCCTTCTTTCTAGTTTCTAAAGATCAAAGAATTCAAAAATTAG
CAGGATACGAGGGGTAATAT

Downstream 100 bases:

>100_bases
AGTAATCAATAACGTATGAAACTCGTTAAAACACGAAGAAAGGATTTTTAGGATATATTTTAGGAAATTTATTATAAACC
GATTCAAAAAGAGATCACAA

Product: GMC oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 536

Protein sequence:

>537_residues
MGGIPAANDKIITPKKHKEIIKKESIKNGIWELNSDVVVIGSGAGGAVAAATLAKNGWNVILIEEGSYFTPAQFNGNEFI
SSARLYRDAGFIVTEEQTLSILQGRTIGGSTTVNWQTSLYPPDYVTEEWDRRFGLKGYSRKDMDFYISSVHERLGVHPVP
QNLINANNNILMKGGKSLGLDPEVLNNNNRGCIGLGRCGLGCPINAKQSMFLTYIPDAIESGAIVIANMKAQVIHDGPTK
TVIADFTPDPYEKTPDVVIQKLKISTKVVVVSAGAIEGPALLQRSGIGNDWVGRNLKVHPTSTIFAVFNEKINMYSGPPQ
SAVIKDGHNQDNTGYGFWLEVAPFRPTLVASLIPFYGSKQFEQIEKYSNMSAGIVLVRDGSDGEANASVKWSLGRRKVYF
ELTSGDGKNMLRGLKMLAEVQAAAGAKELIFPFTDMETPVLVDRNTKFDWVLEKKFNPGSLVVGSAHPHGSIQAANSPEK
GAIDLNMELYGHKNIYVMDASVYPTGLSVNPQITTMSLVLRASQTLALKKSEKLSQF

Sequences:

>Translated_537_residues
MGGIPAANDKIITPKKHKEIIKKESIKNGIWELNSDVVVIGSGAGGAVAAATLAKNGWNVILIEEGSYFTPAQFNGNEFI
SSARLYRDAGFIVTEEQTLSILQGRTIGGSTTVNWQTSLYPPDYVTEEWDRRFGLKGYSRKDMDFYISSVHERLGVHPVP
QNLINANNNILMKGGKSLGLDPEVLNNNNRGCIGLGRCGLGCPINAKQSMFLTYIPDAIESGAIVIANMKAQVIHDGPTK
TVIADFTPDPYEKTPDVVIQKLKISTKVVVVSAGAIEGPALLQRSGIGNDWVGRNLKVHPTSTIFAVFNEKINMYSGPPQ
SAVIKDGHNQDNTGYGFWLEVAPFRPTLVASLIPFYGSKQFEQIEKYSNMSAGIVLVRDGSDGEANASVKWSLGRRKVYF
ELTSGDGKNMLRGLKMLAEVQAAAGAKELIFPFTDMETPVLVDRNTKFDWVLEKKFNPGSLVVGSAHPHGSIQAANSPEK
GAIDLNMELYGHKNIYVMDASVYPTGLSVNPQITTMSLVLRASQTLALKKSEKLSQF
>Mature_536_residues
GGIPAANDKIITPKKHKEIIKKESIKNGIWELNSDVVVIGSGAGGAVAAATLAKNGWNVILIEEGSYFTPAQFNGNEFIS
SARLYRDAGFIVTEEQTLSILQGRTIGGSTTVNWQTSLYPPDYVTEEWDRRFGLKGYSRKDMDFYISSVHERLGVHPVPQ
NLINANNNILMKGGKSLGLDPEVLNNNNRGCIGLGRCGLGCPINAKQSMFLTYIPDAIESGAIVIANMKAQVIHDGPTKT
VIADFTPDPYEKTPDVVIQKLKISTKVVVVSAGAIEGPALLQRSGIGNDWVGRNLKVHPTSTIFAVFNEKINMYSGPPQS
AVIKDGHNQDNTGYGFWLEVAPFRPTLVASLIPFYGSKQFEQIEKYSNMSAGIVLVRDGSDGEANASVKWSLGRRKVYFE
LTSGDGKNMLRGLKMLAEVQAAAGAKELIFPFTDMETPVLVDRNTKFDWVLEKKFNPGSLVVGSAHPHGSIQAANSPEKG
AIDLNMELYGHKNIYVMDASVYPTGLSVNPQITTMSLVLRASQTLALKKSEKLSQF

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: NA

Molecular weight: Translated: 58472; Mature: 58340

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGIPAANDKIITPKKHKEIIKKESIKNGIWELNSDVVVIGSGAGGAVAAATLAKNGWNV
CCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHEEHHHHCCCCEE
ILIEEGSYFTPAQFNGNEFISSARLYRDAGFIVTEEQTLSILQGRTIGGSTTVNWQTSLY
EEECCCCEECCCCCCCHHHHHHHHHEECCCEEEECHHHHHHHCCCCCCCCEEEEEEEECC
PPDYVTEEWDRRFGLKGYSRKDMDFYISSVHERLGVHPVPQNLINANNNILMKGGKSLGL
CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCC
DPEVLNNNNRGCIGLGRCGLGCPINAKQSMFLTYIPDAIESGAIVIANMKAQVIHDGPTK
CHHHHCCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHCCCEEEEEECEEEEEECCCCC
TVIADFTPDPYEKTPDVVIQKLKISTKVVVVSAGAIEGPALLQRSGIGNDWVGRNLKVHP
EEEEECCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEECC
TSTIFAVFNEKINMYSGPPQSAVIKDGHNQDNTGYGFWLEVAPFRPTLVASLIPFYGSKQ
CCEEEEEEECCEEECCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHH
FEQIEKYSNMSAGIVLVRDGSDGEANASVKWSLGRRKVYFELTSGDGKNMLRGLKMLAEV
HHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHH
QAAAGAKELIFPFTDMETPVLVDRNTKFDWVLEKKFNPGSLVVGSAHPHGSIQAANSPEK
HHHCCCCCEEEEECCCCCCEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEECCCCCC
GAIDLNMELYGHKNIYVMDASVYPTGLSVNPQITTMSLVLRASQTLALKKSEKLSQF
CEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHEEECCCHHHCCC
>Mature Secondary Structure 
GGIPAANDKIITPKKHKEIIKKESIKNGIWELNSDVVVIGSGAGGAVAAATLAKNGWNV
CCCCCCCCEEECCHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCHHEEHHHHCCCCEE
ILIEEGSYFTPAQFNGNEFISSARLYRDAGFIVTEEQTLSILQGRTIGGSTTVNWQTSLY
EEECCCCEECCCCCCCHHHHHHHHHEECCCEEEECHHHHHHHCCCCCCCCEEEEEEEECC
PPDYVTEEWDRRFGLKGYSRKDMDFYISSVHERLGVHPVPQNLINANNNILMKGGKSLGL
CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCC
DPEVLNNNNRGCIGLGRCGLGCPINAKQSMFLTYIPDAIESGAIVIANMKAQVIHDGPTK
CHHHHCCCCCCEEEECCCCCCCCCCCCCCEEEEECCHHHCCCEEEEEECEEEEEECCCCC
TVIADFTPDPYEKTPDVVIQKLKISTKVVVVSAGAIEGPALLQRSGIGNDWVGRNLKVHP
EEEEECCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEECC
TSTIFAVFNEKINMYSGPPQSAVIKDGHNQDNTGYGFWLEVAPFRPTLVASLIPFYGSKQ
CCEEEEEEECCEEECCCCCCCEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCHH
FEQIEKYSNMSAGIVLVRDGSDGEANASVKWSLGRRKVYFELTSGDGKNMLRGLKMLAEV
HHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHH
QAAAGAKELIFPFTDMETPVLVDRNTKFDWVLEKKFNPGSLVVGSAHPHGSIQAANSPEK
HHHCCCCCEEEEECCCCCCEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEECCCCCC
GAIDLNMELYGHKNIYVMDASVYPTGLSVNPQITTMSLVLRASQTLALKKSEKLSQF
CEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]