Click here to switch to the map view.

The map label for this gene is trmE [C]

Identifier: 45359205

GI number: 45359205

Start: 1584091

End: 1584645

Strand: Direct

Name: trmE [C]

Synonym: MMP1642

Alternate gene names: 45359205

Gene position: 1584091-1584645 (Clockwise)

Preceding gene: 45359203

Following gene: 45359206

Centisome position: 95.36

GC content: 36.04

Gene sequence:

>555_bases
ATGGAAGAACACCAGTTTAAAATAGCACTTGTTGGCCCTGAAAATTCTGGAAAATCGTCGTTAGTAAATTCCATTTTTGG
AAAAAACATTTCAGAAGTTTCAGAAGTTGGTGGAACCACCAAAATGCCCGTAAAAAAGTTCTGGGGCAAAATTAAGATAG
GAAAACAAAAAATTAATCCGGATTTTGCAAAAATCACGTTTGTAGATTTGGGCGGACTCTACGCAGGCGAAAATAGATCG
GTTGTTATGGTCGGCAGCGTTCTTGAAAAAACTTATGAAGAAATTGATGACTCGGACTTGATAATCCACATAATCGATGG
AAGTACTGACTTATTCAAAAGTTTCGAAAAACTGCACCACTTATTGAAATTCCGATATCGAAAACCTATTATAGTAGTTA
TTAATAAATGTGACTTGATAGAAAATTCCAAACGAGAAGATCTGCGAAAGTATGTTGAGGGGAGATTGGAAAACAAGGCT
TTTTTCACATCCTCAAACACGTACGAAGGTATCGGGGAATTACTAAGTACAATCATAGAAATATTGAGAAGGTGA

Upstream 100 bases:

>100_bases
ATCAAAAACTACCGCGAGTTTCATGTTATCCCTAAAAATTGTTATTACGTTAAATATTATGTTTTATTATACTTTATAAT
TAACAAACTTTGGGATAAAA

Downstream 100 bases:

>100_bases
TCTGTGTTGTTCAAAAAAATCAAAAAAATGATTTCAGGCGATTCATTAAAAACAAGCAGTCCTGTACCTATTGAAGAATA
CGTAGAACTCCCAGTAAAAG

Product: ATP/GTP-binding motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MEEHQFKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKITFVDLGGLYAGENRS
VVMVGSVLEKTYEEIDDSDLIIHIIDGSTDLFKSFEKLHHLLKFRYRKPIIVVINKCDLIENSKREDLRKYVEGRLENKA
FFTSSNTYEGIGELLSTIIEILRR

Sequences:

>Translated_184_residues
MEEHQFKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKITFVDLGGLYAGENRS
VVMVGSVLEKTYEEIDDSDLIIHIIDGSTDLFKSFEKLHHLLKFRYRKPIIVVINKCDLIENSKREDLRKYVEGRLENKA
FFTSSNTYEGIGELLSTIIEILRR
>Mature_184_residues
MEEHQFKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINPDFAKITFVDLGGLYAGENRS
VVMVGSVLEKTYEEIDDSDLIIHIIDGSTDLFKSFEKLHHLLKFRYRKPIIVVINKCDLIENSKREDLRKYVEGRLENKA
FFTSSNTYEGIGELLSTIIEILRR

Specific function: Exhibits A Very High Intrinsic Gtpase Hydrolysis Rate. Involved In The Biosynthesis Of The Hypermodified Nucleoside 5- Methylaminomethyl-2-Thiouridine, Which Is Found In The Wobble Position Of Some Trnas. [C]

COG id: COG1100

COG function: function code R; GTPase SAR1 and related small G proteins

Gene ontology:

Cell location: Cytoplasmic; may also be associated with the inner membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323665, Length=181, Percent_Identity=31.4917127071823, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002917
- InterPro:   IPR001806
- InterPro:   IPR005225 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 20870; Mature: 20870

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEHQFKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINP
CCCCEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHCCEEECHHHCCC
DFAKITFVDLGGLYAGENRSVVMVGSVLEKTYEEIDDSDLIIHIIDGSTDLFKSFEKLHH
CCEEEEEEECCCEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
LLKFRYRKPIIVVINKCDLIENSKREDLRKYVEGRLENKAFFTSSNTYEGIGELLSTIIE
HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
ILRR
HHCC
>Mature Secondary Structure
MEEHQFKIALVGPENSGKSSLVNSIFGKNISEVSEVGGTTKMPVKKFWGKIKIGKQKINP
CCCCEEEEEEECCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHCCEEECHHHCCC
DFAKITFVDLGGLYAGENRSVVMVGSVLEKTYEEIDDSDLIIHIIDGSTDLFKSFEKLHH
CCEEEEEEECCCEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
LLKFRYRKPIIVVINKCDLIENSKREDLRKYVEGRLENKAFFTSSNTYEGIGELLSTIIE
HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
ILRR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]