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The map label for this gene is ssh10b_1

Identifier: 45359176

GI number: 45359176

Start: 1559489

End: 1559758

Strand: Direct

Name: ssh10b_1

Synonym: MMP1613

Alternate gene names: 45359176

Gene position: 1559489-1559758 (Clockwise)

Preceding gene: 45359173

Following gene: 45359182

Centisome position: 93.88

GC content: 36.3

Gene sequence:

>270_bases
ATGGACAATATTGTTTACGTTGGAAACAAAGGCGTAATGAACTACGTGCTTGCAGTGATTACTCAATTTAACTCCGAAAA
TGCCCAGGAAGTAATAGTAAAAGCGAGGGGCAAGGCAATCAGCAGGGCCGTTGATGTTGAAGAAATGGTTACAAAAAGAT
TCATGCCTGAAGTCAAAATTAAAGAAATAAATTTGGGAACTGACCATATACAAGGAGAAGATGGAAAGTCCATTAACGTA
TCCACAATCGAAATAATTCTTTTTAAATAA

Upstream 100 bases:

>100_bases
AACTGTTCTAAATAGTCTCAATATTCAAGTTCCTGCGATAAGGATTAATTAATAAATTATATATATCAAAATTAATATGT
TAAATTTAAGGAGGGATACG

Downstream 100 bases:

>100_bases
TTTTTAAAATATTTTATTAAAAATTTAAAATTCAATTAGATATTTAAAATATCTTTTAATTCAATTAATGACTGTTCTCC
GGTTTCCATATTTTTCAAAG

Product: DNA/RNA-binding protein albA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MDNIVYVGNKGVMNYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRFMPEVKIKEINLGTDHIQGEDGKSINV
STIEIILFK

Sequences:

>Translated_89_residues
MDNIVYVGNKGVMNYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRFMPEVKIKEINLGTDHIQGEDGKSINV
STIEIILFK
>Mature_89_residues
MDNIVYVGNKGVMNYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRFMPEVKIKEINLGTDHIQGEDGKSINV
STIEIILFK

Specific function: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May

COG id: COG1581

COG function: function code K; Archaeal DNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Probable). Chromosome (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like Alba family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALBA_METMP (P60850)

Other databases:

- EMBL:   BX950229
- RefSeq:   NP_988733.1
- ProteinModelPortal:   P60850
- SMR:   P60850
- GeneID:   2761577
- GenomeReviews:   BX950229_GR
- KEGG:   mmp:MMP1613
- NMPDR:   fig|267377.1.peg.1613
- HOGENOM:   HBG727709
- OMA:   STIEIVL
- ProtClustDB:   PRK04015
- BioCyc:   MMAR267377:MMP1613-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_01122
- InterPro:   IPR013795
- InterPro:   IPR002775
- PIRSF:   PIRSF028732
- TIGRFAMs:   TIGR00285

Pfam domain/function: PF01918 Alba

EC number: NA

Molecular weight: Translated: 9940; Mature: 9940

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNIVYVGNKGVMNYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRFMPEVKI
CCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCEE
KEINLGTDHIQGEDGKSINVSTIEIILFK
EEEECCCCCCCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MDNIVYVGNKGVMNYVLAVITQFNSENAQEVIVKARGKAISRAVDVEEMVTKRFMPEVKI
CCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCEE
KEINLGTDHIQGEDGKSINVSTIEIILFK
EEEECCCCCCCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA