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The map label for this gene is 45358179

Identifier: 45358179

GI number: 45358179

Start: 611386

End: 612660

Strand: Direct

Name: 45358179

Synonym: MMP0616

Alternate gene names: NA

Gene position: 611386-612660 (Clockwise)

Preceding gene: 45358177

Following gene: 45358180

Centisome position: 36.81

GC content: 31.29

Gene sequence:

>1275_bases
ATGTATATTGGAATTGATGACACAGACAGTAGGGATCACTACTGCACGACCTATGTTGGAACTATTCTTCAGGAAGAACT
TGAAAAAACGTATCTTATGGACACTCCTAAATTAATTAGAATGAATCCGATGGTTAAATATAAAACTAGGGGAAATGGCG
GAGTTTGTTTAAGAATCATTGAAGATGAAAAAAAATTAAATGAATCAGAAATTGAATCCATTAAAAAATTAGTAATTAAA
ACAGTTGAAAAATTCAGCGATTTTGATTGCGAAAATACAAATCCTGGAATTGTTTTTTTAAGCGAAGAAAATTATCAAAA
AAACCAAAAAACACTTTTAAATTACTATAATTCGGTTTTATACGATATTTTAAAAGTAGAATATTCTGAAAAAATACTCA
ATGAAATCGGTGCAGAATATATAAAATACAAAAAAGGACACGGGATAATCGGAGCTCTTGGTGCAATTGCTTCAAAACCG
CCATTTACTTACGAACTTTTGGCATACCGAAAAAGTGAAAAATGGGGAACAGAGCGAGAAATTGATATTGATTCAATAAT
AAAAATGGATACTGATACATTTCCTTTTACATTTAACAATATCGACGGAAAAAAATCGATAATTACTCCCCACACGCCAT
GCCCTGTTCTTTACGGGATAAGAGGAATTTCAAGAGAAATTTTAGAAAAAGCTAAAAATACTGTAAAATCGGATGAACTT
GACAAATGTCAAGTATATATCACAAATCAGGGAACTGACGTTCATTTAAGATTTTCTAAAATAAACGATATTTATCCAGA
TACTGGAGTTATTTCTTACGGTAAAATCGTTGAAAATCCAAAAGAAATAACTGGCGGACATGTTTTATTTAAAATGAAAG
ATGATACCGGCGAAATTGACTGTATTGCTTATGAACCGACCAAAGAATTTAGAAATATTGTCAGAAAACTCAATTGTGGC
GACCTTGTTGGAGTTTATGGGACAGTTCGAGAGGACCCATTTGAAATAAATATTGAGAAATTAAAAATAGTAACACTTCA
AAAAATATATGAAAAAAATAAATTTTGTGAATGTGGCGGAACCCTGAAAGCTAAAGGGTTAAAAAGCGGTTATAAATGTA
ATATTTGCGGTAAACGAGTTAATTATGATCAAATAAAACTAAATGAAGTAAAAAGGGACATCAAAGAAGGATTTTATGAA
GTTCCGCCTTCTGCGAGGAGGCATTTAAGTAAACCTCTCGTGTTATACGACTTTGATCTGGAAAATATAAGGTAA

Upstream 100 bases:

>100_bases
ATATAATTTGATAGCGATGTTTACATAAATATGTTTTTAGCGAATAAAAATTTCTAAATCTAAATCTAATTTAAATTTTA
CCTGATTTTGAGTGGTAATT

Downstream 100 bases:

>100_bases
ATTATTTATTAGATAATTATACATTTCATTATATCAATGTGATTTTATGCTTGAAGAACTTTTGAACGGAAATATCGAAA
AAAAGACGATAACTCAAATT

Product: OB-fold nucleic acid binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MYIGIDDTDSRDHYCTTYVGTILQEELEKTYLMDTPKLIRMNPMVKYKTRGNGGVCLRIIEDEKKLNESEIESIKKLVIK
TVEKFSDFDCENTNPGIVFLSEENYQKNQKTLLNYYNSVLYDILKVEYSEKILNEIGAEYIKYKKGHGIIGALGAIASKP
PFTYELLAYRKSEKWGTEREIDIDSIIKMDTDTFPFTFNNIDGKKSIITPHTPCPVLYGIRGISREILEKAKNTVKSDEL
DKCQVYITNQGTDVHLRFSKINDIYPDTGVISYGKIVENPKEITGGHVLFKMKDDTGEIDCIAYEPTKEFRNIVRKLNCG
DLVGVYGTVREDPFEINIEKLKIVTLQKIYEKNKFCECGGTLKAKGLKSGYKCNICGKRVNYDQIKLNEVKRDIKEGFYE
VPPSARRHLSKPLVLYDFDLENIR

Sequences:

>Translated_424_residues
MYIGIDDTDSRDHYCTTYVGTILQEELEKTYLMDTPKLIRMNPMVKYKTRGNGGVCLRIIEDEKKLNESEIESIKKLVIK
TVEKFSDFDCENTNPGIVFLSEENYQKNQKTLLNYYNSVLYDILKVEYSEKILNEIGAEYIKYKKGHGIIGALGAIASKP
PFTYELLAYRKSEKWGTEREIDIDSIIKMDTDTFPFTFNNIDGKKSIITPHTPCPVLYGIRGISREILEKAKNTVKSDEL
DKCQVYITNQGTDVHLRFSKINDIYPDTGVISYGKIVENPKEITGGHVLFKMKDDTGEIDCIAYEPTKEFRNIVRKLNCG
DLVGVYGTVREDPFEINIEKLKIVTLQKIYEKNKFCECGGTLKAKGLKSGYKCNICGKRVNYDQIKLNEVKRDIKEGFYE
VPPSARRHLSKPLVLYDFDLENIR
>Mature_424_residues
MYIGIDDTDSRDHYCTTYVGTILQEELEKTYLMDTPKLIRMNPMVKYKTRGNGGVCLRIIEDEKKLNESEIESIKKLVIK
TVEKFSDFDCENTNPGIVFLSEENYQKNQKTLLNYYNSVLYDILKVEYSEKILNEIGAEYIKYKKGHGIIGALGAIASKP
PFTYELLAYRKSEKWGTEREIDIDSIIKMDTDTFPFTFNNIDGKKSIITPHTPCPVLYGIRGISREILEKAKNTVKSDEL
DKCQVYITNQGTDVHLRFSKINDIYPDTGVISYGKIVENPKEITGGHVLFKMKDDTGEIDCIAYEPTKEFRNIVRKLNCG
DLVGVYGTVREDPFEINIEKLKIVTLQKIYEKNKFCECGGTLKAKGLKSGYKCNICGKRVNYDQIKLNEVKRDIKEGFYE
VPPSARRHLSKPLVLYDFDLENIR

Specific function: Unknown

COG id: COG1571

COG function: function code R; Predicted DNA-binding protein containing a Zn-ribbon domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013696
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365 [H]

Pfam domain/function: PF08489 DUF1743; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 48714; Mature: 48714

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIGIDDTDSRDHYCTTYVGTILQEELEKTYLMDTPKLIRMNPMVKYKTRGNGGVCLRII
CEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCEEEEEE
EDEKKLNESEIESIKKLVIKTVEKFSDFDCENTNPGIVFLSEENYQKNQKTLLNYYNSVL
CCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
YDILKVEYSEKILNEIGAEYIKYKKGHGIIGALGAIASKPPFTYELLAYRKSEKWGTERE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEHHHEECCCCCCCCCCC
IDIDSIIKMDTDTFPFTFNNIDGKKSIITPHTPCPVLYGIRGISREILEKAKNTVKSDEL
CCHHHHHCCCCCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
DKCQVYITNQGTDVHLRFSKINDIYPDTGVISYGKIVENPKEITGGHVLFKMKDDTGEID
CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEHHHHHCCCHHCCCCEEEEEEECCCCCEE
CIAYEPTKEFRNIVRKLNCGDLVGVYGTVREDPFEINIEKLKIVTLQKIYEKNKFCECGG
EEEECCHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEHHHEEEHHHHHHHHCCCEECCCC
TLKAKGLKSGYKCNICGKRVNYDQIKLNEVKRDIKEGFYEVPPSARRHLSKPLVLYDFDL
CEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEECCC
ENIR
CCCC
>Mature Secondary Structure
MYIGIDDTDSRDHYCTTYVGTILQEELEKTYLMDTPKLIRMNPMVKYKTRGNGGVCLRII
CEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCEEEEEE
EDEKKLNESEIESIKKLVIKTVEKFSDFDCENTNPGIVFLSEENYQKNQKTLLNYYNSVL
CCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
YDILKVEYSEKILNEIGAEYIKYKKGHGIIGALGAIASKPPFTYELLAYRKSEKWGTERE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEHHHEECCCCCCCCCCC
IDIDSIIKMDTDTFPFTFNNIDGKKSIITPHTPCPVLYGIRGISREILEKAKNTVKSDEL
CCHHHHHCCCCCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
DKCQVYITNQGTDVHLRFSKINDIYPDTGVISYGKIVENPKEITGGHVLFKMKDDTGEID
CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEHHHHHCCCHHCCCCEEEEEEECCCCCEE
CIAYEPTKEFRNIVRKLNCGDLVGVYGTVREDPFEINIEKLKIVTLQKIYEKNKFCECGG
EEEECCHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEHHHEEEHHHHHHHHCCCEECCCC
TLKAKGLKSGYKCNICGKRVNYDQIKLNEVKRDIKEGFYEVPPSARRHLSKPLVLYDFDL
CEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEEECCC
ENIR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]