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The map label for this gene is pdxS [H]

Identifier: 45357666

GI number: 45357666

Start: 111821

End: 112720

Strand: Direct

Name: pdxS [H]

Synonym: MMP0103

Alternate gene names: 45357666

Gene position: 111821-112720 (Clockwise)

Preceding gene: 45357665

Following gene: 45357667

Centisome position: 6.73

GC content: 40.22

Gene sequence:

>900_bases
ATGAAAAAATTAGGAACAGACCTTTTAAAAAGAGGATTTGCGAAAATGGTAAAACACGGGGTTGTAATGGATGTTACAAA
CGTGGAACAGGCATTGATTGCAGAAGAAGCAGGTGCTACTGCTGTAATGGCTTTAGAAAGAGTTCCTGCTGACATTAGGG
TACAGGGCGGCGTTGCAAGAATGTCTGACCCAGAAATGATTTTAGAAATTAAAGACGCAGTATCAATTCCAGTAATGGCA
AAAGCAAGAATTGGGCACTATGTAGAAGCTCAAGTGTTAGAATCAATCGGTGTTGACATGGTCGACGAGAGTGAAGTTTT
AACTCCTGCTGATGAAGTAAACCACATCGATAAACGAGCATTCACAGCACCATTTGTTTGCGGTGCAAGAAACCTTGGCG
AAGCTTTGAGAAGAATCGATGAAGGAGCAGCAATGATTAGGACCAAAGGGGAAGCTGGAACTGGAAACGTTGTTGAAGCT
GTAAAACACATGAGAGCAGTTAACGAAGGAATTGCAAGAGTTATTGGATACAAAGAAATGGGTCTTGAAGCAGAATTAAT
TCAAATGGCAAGAAATGAATTGAAAGTTCCAATGGAGCTTATTTCAGAAGTTGCAGAACTTAAAAGACTTCCTGTTGTAA
ACTTTGCAGCTGGTGGAATTGCAACACCTGCAGACGCAGCTTTAATGATGCAGATGGGATGTGACGGGGTATTTGTGGGC
TCTGGAATCTTTAAATCAGGAAATCCTGCAGTAAGGGCAAAAGCAATCGTTGAAGCAACATACAACTTCGACAAACCAGA
AGTAATAGCAGAAGTAAGCAAAAATTTAGGGGAAGCAATGGTTGGAATTAATATTGATGAAATTCCAGAAGAAATGCTTC
TTGCAAAAAGAGGAATTTAA

Upstream 100 bases:

>100_bases
AATTAAAATATTAAAAAATCAACATACTTTTTTATATTTGAAAACAAAATTAATTTTGAAACGCGTAGTATATGGAACGT
ATCTAAAATGGAGAGATAAC

Downstream 100 bases:

>100_bases
TTTTGCTTAAACTTACCTAAATTTTTATTTTAATTTGGATTTTTATAATATCTTTTTAAAACATAAAACACGATAATTAT
TTGAAAAATAATTTACCAAG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKKLGTDLLKRGFAKMVKHGVVMDVTNVEQALIAEEAGATAVMALERVPADIRVQGGVARMSDPEMILEIKDAVSIPVMA
KARIGHYVEAQVLESIGVDMVDESEVLTPADEVNHIDKRAFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEA
VKHMRAVNEGIARVIGYKEMGLEAELIQMARNELKVPMELISEVAELKRLPVVNFAAGGIATPADAALMMQMGCDGVFVG
SGIFKSGNPAVRAKAIVEATYNFDKPEVIAEVSKNLGEAMVGINIDEIPEEMLLAKRGI

Sequences:

>Translated_299_residues
MKKLGTDLLKRGFAKMVKHGVVMDVTNVEQALIAEEAGATAVMALERVPADIRVQGGVARMSDPEMILEIKDAVSIPVMA
KARIGHYVEAQVLESIGVDMVDESEVLTPADEVNHIDKRAFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEA
VKHMRAVNEGIARVIGYKEMGLEAELIQMARNELKVPMELISEVAELKRLPVVNFAAGGIATPADAALMMQMGCDGVFVG
SGIFKSGNPAVRAKAIVEATYNFDKPEVIAEVSKNLGEAMVGINIDEIPEEMLLAKRGI
>Mature_299_residues
MKKLGTDLLKRGFAKMVKHGVVMDVTNVEQALIAEEAGATAVMALERVPADIRVQGGVARMSDPEMILEIKDAVSIPVMA
KARIGHYVEAQVLESIGVDMVDESEVLTPADEVNHIDKRAFTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEA
VKHMRAVNEGIARVIGYKEMGLEAELIQMARNELKVPMELISEVAELKRLPVVNFAAGGIATPADAALMMQMGCDGVFVG
SGIFKSGNPAVRAKAIVEATYNFDKPEVIAEVSKNLGEAMVGINIDEIPEEMLLAKRGI

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=280, Percent_Identity=61.4285714285714, Blast_Score=345, Evalue=4e-96,
Organism=Saccharomyces cerevisiae, GI6321049, Length=283, Percent_Identity=61.8374558303887, Blast_Score=340, Evalue=1e-94,
Organism=Saccharomyces cerevisiae, GI6323996, Length=283, Percent_Identity=61.4840989399293, Blast_Score=340, Evalue=2e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 32023; Mature: 32023

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLGTDLLKRGFAKMVKHGVVMDVTNVEQALIAEEAGATAVMALERVPADIRVQGGVAR
CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCC
MSDPEMILEIKDAVSIPVMAKARIGHYVEAQVLESIGVDMVDESEVLTPADEVNHIDKRA
CCCCHHHEEEHHHHCCCHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
FTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEAVKHMRAVNEGIARVIGYKEM
HCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLEAELIQMARNELKVPMELISEVAELKRLPVVNFAAGGIATPADAALMMQMGCDGVFVG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCEEEEC
SGIFKSGNPAVRAKAIVEATYNFDKPEVIAEVSKNLGEAMVGINIDEIPEEMLLAKRGI
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCC
>Mature Secondary Structure
MKKLGTDLLKRGFAKMVKHGVVMDVTNVEQALIAEEAGATAVMALERVPADIRVQGGVAR
CCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCC
MSDPEMILEIKDAVSIPVMAKARIGHYVEAQVLESIGVDMVDESEVLTPADEVNHIDKRA
CCCCHHHEEEHHHHCCCHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
FTAPFVCGARNLGEALRRIDEGAAMIRTKGEAGTGNVVEAVKHMRAVNEGIARVIGYKEM
HCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLEAELIQMARNELKVPMELISEVAELKRLPVVNFAAGGIATPADAALMMQMGCDGVFVG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCCEEEEC
SGIFKSGNPAVRAKAIVEATYNFDKPEVIAEVSKNLGEAMVGINIDEIPEEMLLAKRGI
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA