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The map label for this gene is ydcN [H]

Identifier: 45357660

GI number: 45357660

Start: 107207

End: 107755

Strand: Direct

Name: ydcN [H]

Synonym: MMP0097

Alternate gene names: 45357660

Gene position: 107207-107755 (Clockwise)

Preceding gene: 45357658

Following gene: 45357662

Centisome position: 6.45

GC content: 32.24

Gene sequence:

>549_bases
ATGAAGGATCTTAATAAGGCAATTTCTAAAAATCTAAAAAAAATCCGTAAAAAGAAAGATCTAAGTTTAGATGCGTTATC
CAATCTAACTGGAGTAAGTAAGAGCATGCTCGGCCAAATCGAGCGAGGAGAAGTAAACCCCACAATTTCAACAATTTTAA
AGATTTCAAATGGTTTAAAAGTTTCATTCACTTCACTTTTAAAGAACGAAAAACCCGAGATTGATCAAATTCCCTTTGAA
GAGTTAAACCCTGTTTTCGAAGGTGAAGGCCACAAACTCTATCCTGTAATCCCATTTGAAGATGATAAAAGATTTGAAAC
GTATATTGTCGAGATAAAACCAGGACACAAATATTATTCTGAAGGCCACGTGAAAGGAACCGAAGAAATTATAACTGTTT
TCGAAGGTGAACTGCTAATTTCAATAGGAGAAATTGATTATTTCCTTAAAAAAAATGATACAATCAGGTTTAATGCCAAT
AAATCGCATGTTTATGAAAATAGGGGTTTAAAACTTACAAAATTAAATCTTATCCTTCATTACGAGTAA

Upstream 100 bases:

>100_bases
AGATATATTTTGGTAGTTCATAACATACAAATATACAGTATATTGAGTATATTGTAGTATATCTAATCTATATATACATT
ATAGTGCACGAGGAAACGTC

Downstream 100 bases:

>100_bases
TTTAAAAATAGATTAAAAGGTTAAAATAAATTATTGGCAGCATCCACAGGTTTTTTCCTGTTTAATGCATTCTACAGGGC
ATACGTCTGAACAGTCGCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKDLNKAISKNLKKIRKKKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTSLLKNEKPEIDQIPFE
ELNPVFEGEGHKLYPVIPFEDDKRFETYIVEIKPGHKYYSEGHVKGTEEIITVFEGELLISIGEIDYFLKKNDTIRFNAN
KSHVYENRGLKLTKLNLILHYE

Sequences:

>Translated_182_residues
MKDLNKAISKNLKKIRKKKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTSLLKNEKPEIDQIPFE
ELNPVFEGEGHKLYPVIPFEDDKRFETYIVEIKPGHKYYSEGHVKGTEEIITVFEGELLISIGEIDYFLKKNDTIRFNAN
KSHVYENRGLKLTKLNLILHYE
>Mature_182_residues
MKDLNKAISKNLKKIRKKKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTSLLKNEKPEIDQIPFE
ELNPVFEGEGHKLYPVIPFEDDKRFETYIVEIKPGHKYYSEGHVKGTEEIITVFEGELLISIGEIDYFLKKNDTIRFNAN
KSHVYENRGLKLTKLNLILHYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=181, Percent_Identity=29.8342541436464, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787557, Length=181, Percent_Identity=26.5193370165746, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20852; Mature: 20852

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLNKAISKNLKKIRKKKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLK
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCE
VSFTSLLKNEKPEIDQIPFEELNPVFEGEGHKLYPVIPFEDDKRFETYIVEIKPGHKYYS
EEHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCC
EGHVKGTEEIITVFEGELLISIGEIDYFLKKNDTIRFNANKSHVYENRGLKLTKLNLILH
CCCCCCHHHHHEEECCEEEEEECCEEEEEECCCEEEEECCCCEEECCCCEEEEEEEEEEE
YE
EC
>Mature Secondary Structure
MKDLNKAISKNLKKIRKKKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLK
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHCCCCE
VSFTSLLKNEKPEIDQIPFEELNPVFEGEGHKLYPVIPFEDDKRFETYIVEIKPGHKYYS
EEHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCC
EGHVKGTEEIITVFEGELLISIGEIDYFLKKNDTIRFNANKSHVYENRGLKLTKLNLILH
CCCCCCHHHHHEEECCEEEEEECCEEEEEECCCEEEEECCCCEEECCCCEEEEEEEEEEE
YE
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]