| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523463
Identifier: 42523463
GI number: 42523463
Start: 1898302
End: 1899057
Strand: Direct
Name: 42523463
Synonym: Bd1986
Alternate gene names: NA
Gene position: 1898302-1899057 (Clockwise)
Preceding gene: 42523458
Following gene: 42523464
Centisome position: 50.18
GC content: 49.34
Gene sequence:
>756_bases ATGAAGTCTTGGGCCGATATTGGATTTGAAATTGAGATCACAGGTGATGAAAGTCCCAGTTTACGTCTGTTGGAATCCAT CGATGGCGCCACGGATCGCGGCGAAACCATGCATCACTCGGGCGGAGCCTGCTCTGAAACGCTGATGATCTATGGGCAGC CCGCAGCGCAGGTTCTGCAGAAAGTCCAGAAACCTCATTTTCTGGTAGTGGGCCTGGGGCTTGGTTACATTGAACTGGTG ATCGCCCGTGAAGCTTTACTTATGGGAAAAACCGCGGCTGATGTGGGATTGATCACAAGTTATGAAAGCGTGCCAGAACT GCGCGAGTTTTTTGTTCAGTGGCTGCATGAGGATCGTGCGAATCTTCATCCGGAAGTGCTGCAGACCTATGATCAGGTTT TGCAAAGTATTTGCCGCCACACGGATCTGGATCCGCAGGATCTTAAGTTTTTCTTGAAAAATCACTTCTCTGACATCAGT AAAATCAGCGGAGCGCTTTCTGCCGACGTGGAGTTGGTGTCGAAATATCACTGCATATTATATGATGCCTTCAGCTCCAA GACGTCTCCGCATCTTTGGGAGGAAGAGTTCCTGAATAAGATTCTGCGCGAAGGGGCTGAAGAGAAAAGCCTTCTGACAA CCTATGCTTGCAAGGGCAGTTTGAAGCGCGCTTTGAAATCCCAGGGCTTTGAAGTGGTCCTGCGTGAGGGGTTTCAAGGC AAACGCAACTCCACTTTGGGTCTTAAAAGCATCTAA
Upstream 100 bases:
>100_bases AGAGTTTATTGTAGTGCTCACTGATAGTATGATAGGGAACCCCTAACCAGCCTTTTTCCATAGGCACTTTTACAGGTTTT TTCTGCGGGAAGTCAATCAA
Downstream 100 bases:
>100_bases ATTTGTAACGTTACCCGGGTTGAAAAGACCTTGCTAAATACCATCAATAAATCTTTACTTAGTTATGTCTTTGTTTGCGC ACGTAACAGCTTTGCTGATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MKSWADIGFEIEITGDESPSLRLLESIDGATDRGETMHHSGGACSETLMIYGQPAAQVLQKVQKPHFLVVGLGLGYIELV IAREALLMGKTAADVGLITSYESVPELREFFVQWLHEDRANLHPEVLQTYDQVLQSICRHTDLDPQDLKFFLKNHFSDIS KISGALSADVELVSKYHCILYDAFSSKTSPHLWEEEFLNKILREGAEEKSLLTTYACKGSLKRALKSQGFEVVLREGFQG KRNSTLGLKSI
Sequences:
>Translated_251_residues MKSWADIGFEIEITGDESPSLRLLESIDGATDRGETMHHSGGACSETLMIYGQPAAQVLQKVQKPHFLVVGLGLGYIELV IAREALLMGKTAADVGLITSYESVPELREFFVQWLHEDRANLHPEVLQTYDQVLQSICRHTDLDPQDLKFFLKNHFSDIS KISGALSADVELVSKYHCILYDAFSSKTSPHLWEEEFLNKILREGAEEKSLLTTYACKGSLKRALKSQGFEVVLREGFQG KRNSTLGLKSI >Mature_251_residues MKSWADIGFEIEITGDESPSLRLLESIDGATDRGETMHHSGGACSETLMIYGQPAAQVLQKVQKPHFLVVGLGLGYIELV IAREALLMGKTAADVGLITSYESVPELREFFVQWLHEDRANLHPEVLQTYDQVLQSICRHTDLDPQDLKFFLKNHFSDIS KISGALSADVELVSKYHCILYDAFSSKTSPHLWEEEFLNKILREGAEEKSLLTTYACKGSLKRALKSQGFEVVLREGFQG KRNSTLGLKSI
Specific function: Unknown
COG id: COG4121
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28061; Mature: 28061
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSWADIGFEIEITGDESPSLRLLESIDGATDRGETMHHSGGACSETLMIYGQPAAQVLQ CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHH KVQKPHFLVVGLGLGYIELVIAREALLMGKTAADVGLITSYESVPELREFFVQWLHEDRA HHCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHC NLHPEVLQTYDQVLQSICRHTDLDPQDLKFFLKNHFSDISKISGALSADVELVSKYHCIL CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE YDAFSSKTSPHLWEEEFLNKILREGAEEKSLLTTYACKGSLKRALKSQGFEVVLREGFQG EECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC KRNSTLGLKSI CCCCCCCCCCC >Mature Secondary Structure MKSWADIGFEIEITGDESPSLRLLESIDGATDRGETMHHSGGACSETLMIYGQPAAQVLQ CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHH KVQKPHFLVVGLGLGYIELVIAREALLMGKTAADVGLITSYESVPELREFFVQWLHEDRA HHCCCCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHC NLHPEVLQTYDQVLQSICRHTDLDPQDLKFFLKNHFSDISKISGALSADVELVSKYHCIL CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE YDAFSSKTSPHLWEEEFLNKILREGAEEKSLLTTYACKGSLKRALKSQGFEVVLREGFQG EECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC KRNSTLGLKSI CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA