| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is yleA [C]
Identifier: 42523418
GI number: 42523418
Start: 1852919
End: 1854250
Strand: Direct
Name: yleA [C]
Synonym: Bd1940
Alternate gene names: 42523418
Gene position: 1852919-1854250 (Clockwise)
Preceding gene: 42523417
Following gene: 42523419
Centisome position: 48.98
GC content: 52.18
Gene sequence:
>1332_bases ATGAAGTATCAGGTCCACACTTTCGGCTGTAAGGTGAACACTTATGACGCCGGCCTGATCCAGAAAAACCTGAACGCCAG TGGCTTCATGCCGGTGGTGTCCGGCCAGAAAGACGCGCGCATTCACGTGCTGAATACCTGTGCCGTGACTGCGGAAGCCA CGAAAGAGGCCGTTCGCTACATCCGTCGTTTGAAAGTGAAAGATCCTTTCTGCACGATCGTGGTGACAGGCTGTGCGGCG CAAGTTGATACCGGGTCATTCTCGAGTCTTCCAGGGGCTGATCTTATTGTGGCCAATTCCCACAAAAGCAGTCTGCCGGA TCTTTTGAACAAGCATTTCCGTGGTGAACTGACTGAAAAAGTCTTTAAATCCAACATCTTCAAAAAAGAAGATCTGGAAG CCGGCGGTGGTATTGAAAAACAACACACCCGCACCTTCCTGAAAATTCAGGATGGCTGTAACAGCTTCTGCACCTATTGC ATTATCCCGTATGCTCGTGGGAAAAGCCGTTCTATCCCGGTGGCGGATCTGGTGAATCGTATCAATGATCTGTATGCGGA AGGCTCACGCGAAGTGGTGCTGACCGGTGTGCATATTGGGGATTACGAAGACCAGATCGGGGACCGCAAATACGTGATGG AAGATCTGCTGGAAAATCTTCTGGCAAAAACCAAAATGCCACGTTTCCGTCTTTCAAGCCTTGAGCCGGTGGAAGTGTCT GAGCGCCTGCTGGATCTTTATCAGGACTCACGTCTGTGTCCGCATTTCCACATGAGCATTCAAAGTGCCAACACGGATGT GCTTTTCCATATGAAGCGCAAATACACGCAAGAAGACGTGCAAAAATCTCTGCGCGCGATTGCGGACCGTGTTCCAGGCA GCTTTGTTGGGATGGACGTGATCACGGGTTTCCCAACTGAAACCGAAGAGCAATTCCAGGACACTTATAACTGCCTGAAG GATCTGCCGTGGACCAAGCTGCACGTATTCCCGTACAGCGAACGTCAGGGCACTCGTGCGGCGGCCATGGATGTTTCTGT GTATCCGCATGTGCGCGCGGAAAGAGCGGCCCGTCTGCGCGAACTGAGCATCGCCCGTTACACGGAGCAAGCCCAGAATC AGATCGGCAGCACCAAGCGTGTACTGGTCCTGAAAAATGCCGCCAAAGGCGGACAGGGTCTCAGTCATGATTACTGGCCA GTGGATATCGCAGGTGCGGAAAGCTTCCTGGATCACTGGGCAGGGCAGGAAGTTGATGTGAAAGTCACAGGCTATGATCA TTCCAACAAACAACACATGGAAGGTCATCTGATCGGCGAGGTGCTCTCATGA
Upstream 100 bases:
>100_bases TCAAATTGAAATTCACAGAGCCTCAGCGTGCGGTGACTCCGGGTCAGGCTGCCGTGTTCTATCGTGACAGACAGCTCGTG GGGGGCGGATGGATCACTCT
Downstream 100 bases:
>100_bases TCGATCAGGGGCGAAAGAGTCTGGAAGAGCGTGTAGGACATCAATTTAAAAACCCGGCACTGCTGGAAAGAGCGTTGACC CACAAGAGTTTTGCCAACGA
Product: Fe-S oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MKYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRYIRRLKVKDPFCTIVVTGCAA QVDTGSFSSLPGADLIVANSHKSSLPDLLNKHFRGELTEKVFKSNIFKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYC IIPYARGKSRSIPVADLVNRINDLYAEGSREVVLTGVHIGDYEDQIGDRKYVMEDLLENLLAKTKMPRFRLSSLEPVEVS ERLLDLYQDSRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRAIADRVPGSFVGMDVITGFPTETEEQFQDTYNCLK DLPWTKLHVFPYSERQGTRAAAMDVSVYPHVRAERAARLRELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWP VDIAGAESFLDHWAGQEVDVKVTGYDHSNKQHMEGHLIGEVLS
Sequences:
>Translated_443_residues MKYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRYIRRLKVKDPFCTIVVTGCAA QVDTGSFSSLPGADLIVANSHKSSLPDLLNKHFRGELTEKVFKSNIFKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYC IIPYARGKSRSIPVADLVNRINDLYAEGSREVVLTGVHIGDYEDQIGDRKYVMEDLLENLLAKTKMPRFRLSSLEPVEVS ERLLDLYQDSRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRAIADRVPGSFVGMDVITGFPTETEEQFQDTYNCLK DLPWTKLHVFPYSERQGTRAAAMDVSVYPHVRAERAARLRELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWP VDIAGAESFLDHWAGQEVDVKVTGYDHSNKQHMEGHLIGEVLS >Mature_443_residues MKYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRYIRRLKVKDPFCTIVVTGCAA QVDTGSFSSLPGADLIVANSHKSSLPDLLNKHFRGELTEKVFKSNIFKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYC IIPYARGKSRSIPVADLVNRINDLYAEGSREVVLTGVHIGDYEDQIGDRKYVMEDLLENLLAKTKMPRFRLSSLEPVEVS ERLLDLYQDSRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRAIADRVPGSFVGMDVITGFPTETEEQFQDTYNCLK DLPWTKLHVFPYSERQGTRAAAMDVSVYPHVRAERAARLRELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWP VDIAGAESFLDHWAGQEVDVKVTGYDHSNKQHMEGHLIGEVLS
Specific function: Unknown
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MTTase N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI93277076, Length=453, Percent_Identity=25.8278145695364, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI28872782, Length=414, Percent_Identity=25.3623188405797, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI28872784, Length=414, Percent_Identity=25.3623188405797, Blast_Score=127, Evalue=2e-29, Organism=Escherichia coli, GI1786882, Length=428, Percent_Identity=27.5700934579439, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1787057, Length=417, Percent_Identity=25.8992805755396, Blast_Score=109, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17553146, Length=469, Percent_Identity=24.9466950959488, Blast_Score=121, Evalue=7e-28, Organism=Caenorhabditis elegans, GI71996771, Length=258, Percent_Identity=31.3953488372093, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI21356207, Length=435, Percent_Identity=25.2873563218391, Blast_Score=131, Evalue=9e-31, Organism=Drosophila melanogaster, GI19922432, Length=399, Percent_Identity=27.8195488721804, Blast_Score=120, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006467 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM; PF00919 UPF0004 [H]
EC number: NA
Molecular weight: Translated: 49708; Mature: 49708
Theoretical pI: Translated: 7.61; Mature: 7.61
Prosite motif: PS01278 UPF0004
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRY CCEEEEEEEEEEECCCCHHHHCCCCCCCCEEEECCCCCCEEEEEEEEEECHHHHHHHHHH IRRLKVKDPFCTIVVTGCAAQVDTGSFSSLPGADLIVANSHKSSLPDLLNKHFRGELTEK HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCHHHHHH VFKSNIFKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYCIIPYARGKSRSIPVADLVNR HHHHCCCCCCCCCCCCCCCHHHHHHHEEECCCHHHHHHHHEEECCCCCCCCCCHHHHHHH INDLYAEGSREVVLTGVHIGDYEDQIGDRKYVMEDLLENLLAKTKMPRFRLSSLEPVEVS HHHHHHCCCCEEEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHH ERLLDLYQDSRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRAIADRVPGSFVGMDV HHHHHHHHCCCCCCHHEEEEECCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCCEECHHH ITGFPTETEEQFQDTYNCLKDLPWTKLHVFPYSERQGTRAAAMDVSVYPHVRAERAARLR HCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHH ELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWPVDIAGAESFLDHWAGQEVDV HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHCCCEEEE KVTGYDHSNKQHMEGHLIGEVLS EEECCCCCCCHHHCHHHHHHHCC >Mature Secondary Structure MKYQVHTFGCKVNTYDAGLIQKNLNASGFMPVVSGQKDARIHVLNTCAVTAEATKEAVRY CCEEEEEEEEEEECCCCHHHHCCCCCCCCEEEECCCCCCEEEEEEEEEECHHHHHHHHHH IRRLKVKDPFCTIVVTGCAAQVDTGSFSSLPGADLIVANSHKSSLPDLLNKHFRGELTEK HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCHHHHHH VFKSNIFKKEDLEAGGGIEKQHTRTFLKIQDGCNSFCTYCIIPYARGKSRSIPVADLVNR HHHHCCCCCCCCCCCCCCCHHHHHHHEEECCCHHHHHHHHEEECCCCCCCCCCHHHHHHH INDLYAEGSREVVLTGVHIGDYEDQIGDRKYVMEDLLENLLAKTKMPRFRLSSLEPVEVS HHHHHHCCCCEEEEEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHH ERLLDLYQDSRLCPHFHMSIQSANTDVLFHMKRKYTQEDVQKSLRAIADRVPGSFVGMDV HHHHHHHHCCCCCCHHEEEEECCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCCEECHHH ITGFPTETEEQFQDTYNCLKDLPWTKLHVFPYSERQGTRAAAMDVSVYPHVRAERAARLR HCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHH ELSIARYTEQAQNQIGSTKRVLVLKNAAKGGQGLSHDYWPVDIAGAESFLDHWAGQEVDV HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHCCCEEEE KVTGYDHSNKQHMEGHLIGEVLS EEECCCCCCCHHHCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]