| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523193
Identifier: 42523193
GI number: 42523193
Start: 1632669
End: 1633886
Strand: Direct
Name: 42523193
Synonym: Bd1696
Alternate gene names: NA
Gene position: 1632669-1633886 (Clockwise)
Preceding gene: 42523192
Following gene: 42523197
Centisome position: 43.16
GC content: 43.43
Gene sequence:
>1218_bases ATGAATATTCTGATTGTTACACAGTACTTTTTTCCGGAGACCTTCATTATCAATGACTTGGTTGTTGAGATGGAAAAGCA AGGTCACAATGTGACAGTCTTGACCGGGAAGCCAAATTATCCAGATGGTAAGATATTCTCTGGTTATAAAGCGTCTGGTG TGGTTCGCGAAAAGTATGCTGAGGATGTTGAGATTGTTCGTGTTCCCCTGAGACCAAGGGGGGCGGGGGGCGCAAAGAAT CTTATTCTAAATTATTTGTCCTTCGTCTTGTTTGGATGTTTGTTGGGGCCGTGGTTGCTCCGTAAGAAGAAGTTTGATGT GTCATTTGTATTCGTACCTTCGCCAATTACCGGCGCTTTTCCTGCGATGGTACTAAAAGGGCTGACAGGGACGCCAATTG CTTTGTGGGTTTTGGATTTATGGCCGCAAAGTCTGGTTGTTACTAAGTTTGTAAAGAATCCCGTTCTGCTGAAGGCCGTG GAGGCAATGGTTTGGTTTATTTACCGCTGCTGCGACTCGGTTCTTGTTCAATCTAAATCTTTCATTGAACCGGTTAAGAA AATAGACAGTAAATGTACTCCAATTTATTATCCTAATTCTTTTAAGAAGATGTCCATTGATCCTACTTTGACTCTGCCTT TGGATGCGGAGAATGCTTTGAAGAAGCACTTTTCTGTGGTCTTTGCCGGCAATATCGGTAAAGCACAATCCGTCGAAACT ATTGTTGCGGCAGCCAAATTGCTCCAGGATCTGCCTGATTTGAAAATTGTTTTCGTGGGCAGCGGTAGCATGTTGTCTTG GATTCAAGATAAGATCAAGATTGACGGTCTTTCAAATATTCAGTGCTTGGGACGGTTCGATATTTCTTACATTCCCCTTA TCTACGCTCAGTCCAGTGCGCTATTGTTGACTCTTAATGCGGATGAAATTTTGAAATACACTCTTCCTTGGAAGACTCAA TCATATATGGCAGCGGGAAAGCCCATTATTGGTGCAATCGATGGTGAAGGTGCTAGGACTATATTAGAGGCAGAATGCGG CCTGTGTGGGCCGGCTGAGGATGCTCAGGCGCTTGCCGACAATATTCGCAGAATGTATGTAATGGATCCATTAGAGCTAG AGGCCATGGGAAATCGCGGCAAAAAGTACTACGAGGATAACTTTGAAATGACGACGCAAACCACTCGGTTGATAAATATT TTAAGAACAACTAAGTAA
Upstream 100 bases:
>100_bases GACAGGTGGCGGATTATTCGATGCCAAACGTATCAGACAAGGTGGTTCGAATTATTCAGAGCTATACAGATTATGTGAAT AGGGTTGTTTGGCGTAAATA
Downstream 100 bases:
>100_bases GTCATCTCAGTTCTGAATCATCTCAGCCAGTCCCTCCTGGGTAGACAAAGGTGCATTGTATCCAATGATTTTGTCGCCTT CTGCGCTGTTCATGGCAAGA
Product: putative glycosyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Group 1 Family Protein; Glycosyl Transferase; Capsular Polysaccharide Biosynthesis F; Group 1 Glycosyl Transferase; Glycosyl Transferase Group 1 Protein; Lipopolysaccharide Biosynthesis Protein; Group 1 Family Glycosyl Transferase; LPS Biosynthesis Related Glycosyltransferase; Colanic Acid Biosynthesis Glycosyl Transferase; Colanic Acid Biosynthesis Glycosyl Transferase WcaI; Glycosyltransferase Protein; A-Glycosyltransferase; WblI Protein; Group Glycosyltransferase; Group 1 Family Glycosyltransferase; Colanic Acid Biosynthesis Glycosyl-Transferase; Glycosyltransferase Group 1 Family; Glycosyltransferase Group 1 Protein; Glycosyltransferase-Like Protein; Group 1glycosyl Transferase; Lipopolysaccharide Biosynthesis Glycosyltransferase; Glycosyltransferase Family 4 Protein; Group 1 Glycosyl Transferase Protein; Glycosyl Transferase GT4 Family Protein; Glycosyl Transferase Family Protein; CapK Protein; Glycosyltransferase Group 1 Family Protein
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYAEDVEIVRVPLRPRGAGGAKN LILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAFPAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAV EAMVWFIYRCCDSVLVQSKSFIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSALLLTLNADEILKYTLPWKTQ SYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALADNIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINI LRTTK
Sequences:
>Translated_405_residues MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYAEDVEIVRVPLRPRGAGGAKN LILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAFPAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAV EAMVWFIYRCCDSVLVQSKSFIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSALLLTLNADEILKYTLPWKTQ SYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALADNIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINI LRTTK >Mature_405_residues MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYAEDVEIVRVPLRPRGAGGAKN LILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAFPAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAV EAMVWFIYRCCDSVLVQSKSFIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSALLLTLNADEILKYTLPWKTQ SYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALADNIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINI LRTTK
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45043; Mature: 45043
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYA CEEEEEEHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCHHHHHHH EDVEIVRVPLRPRGAGGAKNLILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAF CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH PAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAVEAMVWFIYRCCDSVLVQSKS HHHHHCCCCCCCCEEHEEHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET HHHHHHHHCCCCCEEECCCCCCEEECCCEEEEECCHHHHHHHHEEEEEECCCCCCHHHHH IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSA HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHEECCCCCCEEEEECCCEEEEEEEECCCE LLLTLNADEILKYTLPWKTQSYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALAD EEEEECHHHHEEEECCCCCCHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHH NIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINILRTTK HHHEEEEECCHHHHCCCCCCCEEECCCCEEHHHHHHHHHHHHCCC >Mature Secondary Structure MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYA CEEEEEEHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCHHHHHHH EDVEIVRVPLRPRGAGGAKNLILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAF CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH PAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAVEAMVWFIYRCCDSVLVQSKS HHHHHCCCCCCCCEEHEEHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET HHHHHHHHCCCCCEEECCCCCCEEECCCEEEEECCHHHHHHHHEEEEEECCCCCCHHHHH IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSA HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHEECCCCCCEEEEECCCEEEEEEEECCCE LLLTLNADEILKYTLPWKTQSYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALAD EEEEECHHHHEEEECCCCCCHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHH NIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINILRTTK HHHEEEEECCHHHHCCCCCCCEEECCCCEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA