Definition Bdellovibrio bacteriovorus HD100, complete genome.
Accession NC_005363
Length 3,782,950

Click here to switch to the map view.

The map label for this gene is 42523193

Identifier: 42523193

GI number: 42523193

Start: 1632669

End: 1633886

Strand: Direct

Name: 42523193

Synonym: Bd1696

Alternate gene names: NA

Gene position: 1632669-1633886 (Clockwise)

Preceding gene: 42523192

Following gene: 42523197

Centisome position: 43.16

GC content: 43.43

Gene sequence:

>1218_bases
ATGAATATTCTGATTGTTACACAGTACTTTTTTCCGGAGACCTTCATTATCAATGACTTGGTTGTTGAGATGGAAAAGCA
AGGTCACAATGTGACAGTCTTGACCGGGAAGCCAAATTATCCAGATGGTAAGATATTCTCTGGTTATAAAGCGTCTGGTG
TGGTTCGCGAAAAGTATGCTGAGGATGTTGAGATTGTTCGTGTTCCCCTGAGACCAAGGGGGGCGGGGGGCGCAAAGAAT
CTTATTCTAAATTATTTGTCCTTCGTCTTGTTTGGATGTTTGTTGGGGCCGTGGTTGCTCCGTAAGAAGAAGTTTGATGT
GTCATTTGTATTCGTACCTTCGCCAATTACCGGCGCTTTTCCTGCGATGGTACTAAAAGGGCTGACAGGGACGCCAATTG
CTTTGTGGGTTTTGGATTTATGGCCGCAAAGTCTGGTTGTTACTAAGTTTGTAAAGAATCCCGTTCTGCTGAAGGCCGTG
GAGGCAATGGTTTGGTTTATTTACCGCTGCTGCGACTCGGTTCTTGTTCAATCTAAATCTTTCATTGAACCGGTTAAGAA
AATAGACAGTAAATGTACTCCAATTTATTATCCTAATTCTTTTAAGAAGATGTCCATTGATCCTACTTTGACTCTGCCTT
TGGATGCGGAGAATGCTTTGAAGAAGCACTTTTCTGTGGTCTTTGCCGGCAATATCGGTAAAGCACAATCCGTCGAAACT
ATTGTTGCGGCAGCCAAATTGCTCCAGGATCTGCCTGATTTGAAAATTGTTTTCGTGGGCAGCGGTAGCATGTTGTCTTG
GATTCAAGATAAGATCAAGATTGACGGTCTTTCAAATATTCAGTGCTTGGGACGGTTCGATATTTCTTACATTCCCCTTA
TCTACGCTCAGTCCAGTGCGCTATTGTTGACTCTTAATGCGGATGAAATTTTGAAATACACTCTTCCTTGGAAGACTCAA
TCATATATGGCAGCGGGAAAGCCCATTATTGGTGCAATCGATGGTGAAGGTGCTAGGACTATATTAGAGGCAGAATGCGG
CCTGTGTGGGCCGGCTGAGGATGCTCAGGCGCTTGCCGACAATATTCGCAGAATGTATGTAATGGATCCATTAGAGCTAG
AGGCCATGGGAAATCGCGGCAAAAAGTACTACGAGGATAACTTTGAAATGACGACGCAAACCACTCGGTTGATAAATATT
TTAAGAACAACTAAGTAA

Upstream 100 bases:

>100_bases
GACAGGTGGCGGATTATTCGATGCCAAACGTATCAGACAAGGTGGTTCGAATTATTCAGAGCTATACAGATTATGTGAAT
AGGGTTGTTTGGCGTAAATA

Downstream 100 bases:

>100_bases
GTCATCTCAGTTCTGAATCATCTCAGCCAGTCCCTCCTGGGTAGACAAAGGTGCATTGTATCCAATGATTTTGTCGCCTT
CTGCGCTGTTCATGGCAAGA

Product: putative glycosyltransferase

Products: NA

Alternate protein names: Glycosyl Transferase Group 1 Family Protein; Glycosyl Transferase; Capsular Polysaccharide Biosynthesis F; Group 1 Glycosyl Transferase; Glycosyl Transferase Group 1 Protein; Lipopolysaccharide Biosynthesis Protein; Group 1 Family Glycosyl Transferase; LPS Biosynthesis Related Glycosyltransferase; Colanic Acid Biosynthesis Glycosyl Transferase; Colanic Acid Biosynthesis Glycosyl Transferase WcaI; Glycosyltransferase Protein; A-Glycosyltransferase; WblI Protein; Group Glycosyltransferase; Group 1 Family Glycosyltransferase; Colanic Acid Biosynthesis Glycosyl-Transferase; Glycosyltransferase Group 1 Family; Glycosyltransferase Group 1 Protein; Glycosyltransferase-Like Protein; Group 1glycosyl Transferase; Lipopolysaccharide Biosynthesis Glycosyltransferase; Glycosyltransferase Family 4 Protein; Group 1 Glycosyl Transferase Protein; Glycosyl Transferase GT4 Family Protein; Glycosyl Transferase Family Protein; CapK Protein; Glycosyltransferase Group 1 Family Protein

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYAEDVEIVRVPLRPRGAGGAKN
LILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAFPAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAV
EAMVWFIYRCCDSVLVQSKSFIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET
IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSALLLTLNADEILKYTLPWKTQ
SYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALADNIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINI
LRTTK

Sequences:

>Translated_405_residues
MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYAEDVEIVRVPLRPRGAGGAKN
LILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAFPAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAV
EAMVWFIYRCCDSVLVQSKSFIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET
IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSALLLTLNADEILKYTLPWKTQ
SYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALADNIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINI
LRTTK
>Mature_405_residues
MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYAEDVEIVRVPLRPRGAGGAKN
LILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAFPAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAV
EAMVWFIYRCCDSVLVQSKSFIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET
IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSALLLTLNADEILKYTLPWKTQ
SYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALADNIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINI
LRTTK

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45043; Mature: 45043

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYA
CEEEEEEHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCHHHHHHH
EDVEIVRVPLRPRGAGGAKNLILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAF
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
PAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAVEAMVWFIYRCCDSVLVQSKS
HHHHHCCCCCCCCEEHEEHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET
HHHHHHHHCCCCCEEECCCCCCEEECCCEEEEECCHHHHHHHHEEEEEECCCCCCHHHHH
IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSA
HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHEECCCCCCEEEEECCCEEEEEEEECCCE
LLLTLNADEILKYTLPWKTQSYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALAD
EEEEECHHHHEEEECCCCCCHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHH
NIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINILRTTK
HHHEEEEECCHHHHCCCCCCCEEECCCCEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNILIVTQYFFPETFIINDLVVEMEKQGHNVTVLTGKPNYPDGKIFSGYKASGVVREKYA
CEEEEEEHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCHHHHHHH
EDVEIVRVPLRPRGAGGAKNLILNYLSFVLFGCLLGPWLLRKKKFDVSFVFVPSPITGAF
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH
PAMVLKGLTGTPIALWVLDLWPQSLVVTKFVKNPVLLKAVEAMVWFIYRCCDSVLVQSKS
HHHHHCCCCCCCCEEHEEHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIEPVKKIDSKCTPIYYPNSFKKMSIDPTLTLPLDAENALKKHFSVVFAGNIGKAQSVET
HHHHHHHHCCCCCEEECCCCCCEEECCCEEEEECCHHHHHHHHEEEEEECCCCCCHHHHH
IVAAAKLLQDLPDLKIVFVGSGSMLSWIQDKIKIDGLSNIQCLGRFDISYIPLIYAQSSA
HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHEECCCCCCEEEEECCCEEEEEEEECCCE
LLLTLNADEILKYTLPWKTQSYMAAGKPIIGAIDGEGARTILEAECGLCGPAEDAQALAD
EEEEECHHHHEEEECCCCCCHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHH
NIRRMYVMDPLELEAMGNRGKKYYEDNFEMTTQTTRLINILRTTK
HHHEEEEECCHHHHCCCCCCCEEECCCCEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA