| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42523108
Identifier: 42523108
GI number: 42523108
Start: 1533585
End: 1534442
Strand: Direct
Name: 42523108
Synonym: Bd1603
Alternate gene names: NA
Gene position: 1533585-1534442 (Clockwise)
Preceding gene: 42523104
Following gene: 42523109
Centisome position: 40.54
GC content: 50.23
Gene sequence:
>858_bases GTGTCACGGTTAAGGTCTATCAGGTCAAGAAGTGAGAGTGATATGGTTAATGCAAATGAAGTACCCTTGATTGTGACGAT CCCCCATTCCGGTGAAAAAGTTCCGGATCAAACGCCGTGGTTGAAGTCTTTGCCCGAGGAAGTTTTGATGTGCGACGTGG ATCGTTTTGTCGACTTTCTGTATGAACCGACTTTGCACAAGCTGCACATTCCCTATGTGAAAACCGAATGGCATCGTTAT GCGGCCGACTTGAACCGGGTGCCTGAAGACGTGGACGCAACGTCCGTTATCGGCAACAGCAACCCGGCCGGCATGCACAA CCGTGGCTTTCACTGGGTGATCACGACTTACAAACATCAGCTGATGAAAGAACCAATGTCGGTGGATGCGCACAACGAAC TGGTGAAGCTGGTTTATGAGCCCTTCCATGCCGGCGTTCGCAAGCTGTATGCGGACCTGCATGAAAAAGGTTTCAAGAAA ACTTATCACATTGATGCCCACAGCATGCCCTCTTTGGGGACCAGCGAGCACCGCGATCCGGGCGAATTGAGAGCCGATAT CGTTGTCAGCGACAGCAAAGGCAAAAGCTGTGACCCGCGCTTTAAAGATCTGGTGATTGCGGCCTATGCCTCTGCCGGAT TCAAAGTCGGTTACAACTGGCCGTATTTTGGCGGGCGCGTCACGGAGCAATACGGTGATCCTAAACGCGAGCAACATACA CTTCAGGTGGAGCTGAACCGCTCATTGTATATGGATGAAAAGACCAAAAAGCTCAAACCTGAAGAAGCGAAAAAGGTTCA AGAGAAGCTGTTGTTCGCCGTCAGTTATGTCCGCAACAATTTGCTGCATATAATGTAG
Upstream 100 bases:
>100_bases CAGGAGCCGTCCACAAGGCGGGTGCTGCCTTTGTCGCCAGTGCGCGTATAAATTTTGGCTTTGGGAGCATTCGTCATAGA TTTGACCCTTCTTGTATTTA
Downstream 100 bases:
>100_bases GGCGTCGTAAAGGCAAAAAGCGTGGTCATAAAAGCCGATCTAAACTATTGATAGCTATACCAAAATTAATAAGCTCTCAA TAAGGATCGGCTTTGGATAA
Product: putative formiminoglutamase
Products: NA
Alternate protein names: N-Formylglutamate Amidohydrolase Family Protein; Hydrolase; N-Formylglutamate Deformylase; Formiminoglutamase; N-Formylglutamate Amidohydrolase Superfamily; N-Formylglutamate Amidohydrolase Family; Formylglutamate Amidohydrolase; Amidohydrolase; N-Formylglutamate Amidohydrolase Protein
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSRLRSIRSRSESDMVNANEVPLIVTIPHSGEKVPDQTPWLKSLPEEVLMCDVDRFVDFLYEPTLHKLHIPYVKTEWHRY AADLNRVPEDVDATSVIGNSNPAGMHNRGFHWVITTYKHQLMKEPMSVDAHNELVKLVYEPFHAGVRKLYADLHEKGFKK TYHIDAHSMPSLGTSEHRDPGELRADIVVSDSKGKSCDPRFKDLVIAAYASAGFKVGYNWPYFGGRVTEQYGDPKREQHT LQVELNRSLYMDEKTKKLKPEEAKKVQEKLLFAVSYVRNNLLHIM
Sequences:
>Translated_285_residues MSRLRSIRSRSESDMVNANEVPLIVTIPHSGEKVPDQTPWLKSLPEEVLMCDVDRFVDFLYEPTLHKLHIPYVKTEWHRY AADLNRVPEDVDATSVIGNSNPAGMHNRGFHWVITTYKHQLMKEPMSVDAHNELVKLVYEPFHAGVRKLYADLHEKGFKK TYHIDAHSMPSLGTSEHRDPGELRADIVVSDSKGKSCDPRFKDLVIAAYASAGFKVGYNWPYFGGRVTEQYGDPKREQHT LQVELNRSLYMDEKTKKLKPEEAKKVQEKLLFAVSYVRNNLLHIM >Mature_284_residues SRLRSIRSRSESDMVNANEVPLIVTIPHSGEKVPDQTPWLKSLPEEVLMCDVDRFVDFLYEPTLHKLHIPYVKTEWHRYA ADLNRVPEDVDATSVIGNSNPAGMHNRGFHWVITTYKHQLMKEPMSVDAHNELVKLVYEPFHAGVRKLYADLHEKGFKKT YHIDAHSMPSLGTSEHRDPGELRADIVVSDSKGKSCDPRFKDLVIAAYASAGFKVGYNWPYFGGRVTEQYGDPKREQHTL QVELNRSLYMDEKTKKLKPEEAKKVQEKLLFAVSYVRNNLLHIM
Specific function: Unknown
COG id: COG3741
COG function: function code E; N-formylglutamate amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32801; Mature: 32670
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLRSIRSRSESDMVNANEVPLIVTIPHSGEKVPDQTPWLKSLPEEVLMCDVDRFVDFL CCHHHHHHHCCHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHH YEPTLHKLHIPYVKTEWHRYAADLNRVPEDVDATSVIGNSNPAGMHNRGFHWVITTYKHQ HCCCHHEEECCEEHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEHHHHHH LMKEPMSVDAHNELVKLVYEPFHAGVRKLYADLHEKGFKKTYHIDAHSMPSLGTSEHRDP HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC GELRADIVVSDSKGKSCDPRFKDLVIAAYASAGFKVGYNWPYFGGRVTEQYGDPKREQHT CCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCEEEHHCCCCCCCCEE LQVELNRSLYMDEKTKKLKPEEAKKVQEKLLFAVSYVRNNLLHIM EEEEECCCEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure SRLRSIRSRSESDMVNANEVPLIVTIPHSGEKVPDQTPWLKSLPEEVLMCDVDRFVDFL CHHHHHHHCCHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHH YEPTLHKLHIPYVKTEWHRYAADLNRVPEDVDATSVIGNSNPAGMHNRGFHWVITTYKHQ HCCCHHEEECCEEHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEHHHHHH LMKEPMSVDAHNELVKLVYEPFHAGVRKLYADLHEKGFKKTYHIDAHSMPSLGTSEHRDP HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC GELRADIVVSDSKGKSCDPRFKDLVIAAYASAGFKVGYNWPYFGGRVTEQYGDPKREQHT CCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCEEEHHCCCCCCCCEE LQVELNRSLYMDEKTKKLKPEEAKKVQEKLLFAVSYVRNNLLHIM EEEEECCCEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA