Click here to switch to the map view.

The map label for this gene is yisS [H]

Identifier: 42523004

GI number: 42523004

Start: 1416328

End: 1417254

Strand: Direct

Name: yisS [H]

Synonym: Bd1496

Alternate gene names: 42523004

Gene position: 1416328-1417254 (Clockwise)

Preceding gene: 42523003

Following gene: 42523005

Centisome position: 37.44

GC content: 50.27

Gene sequence:

>927_bases
ATGAGTAAGAAACTTCGTGGCGCGGTTGTCGGGGTGGGTTACCTCGGTAAATTCCACGCCCAGAAATACAAAAACAATCC
GAACGTGGAACTGGTCGGGGTGTGTGATCACTTCCCGGCTCAGGCCGACAAAATCGCGATGGAGTTGGGGGTAAAAAGCT
TCCACAAACCACAGGATTTGATCGGTCATGTGGATCTGGTGACGATCGCGGCGAGCACTCTGAGTCACTTTGAACTGGCA
AAGATGTTCGTGGAAAACGGCGTTCATGTGAACGTTGAAAAGCCAATCACCGCCACGGTTCCGCAAGCGGAAGAACTATT
GGCGCTGGCGGCGAAAAAGAACGTGAAAGTGGCAGTGGGGCACATCGAAAGATTCAACCCGGCAATCAACGATCTGCAAA
AGCATCTGAAGAATCCCAAATTCATCGAATTAAACCGCATGGCTCCTTATAACAAGCGCGGTTCCGATGTCAGCGTTCTG
CACGATCTGATGATCCACGATATGGATCTGTTGTTCTGGCTGACGGGTTCTGAAATTGAATCCATGACAGGAACGGGCAC
CAAGCTTATTTCCAAAGAGCTGGATACCGCCTCTGTGTCATTCAAAATGAAGAATGGCATGCAGGTGATGATCAACGTCA
GTCGTGTATCACCGGTGGCTCAGCGATCTATCCGCGTGCTGCAGGATGATTGCACGCTGTGGGCCCAGACAGGGACATTG
GAACTTGAAAAAGTGGTTCCGGGTCCTGGTGGTGATGAGTTTTTGACAGTCACCAAATGGAGCGTGGAAAAAGCCGATGC
TTTGCAAAGAGAAACCGACGCTTTCATCGACTGTGTATTGAATGACAAACAACCTGTCGTCACAGGTCTTGACGGGTTGA
AAGCCCTGAAAGCCATCGAAGACGTGCAGAGAATGATTGAGGGCTGA

Upstream 100 bases:

>100_bases
GAGTGCACGATGAGCCCGAACATCGAGTACTTCGTGAACTTCATTCGCTCTTCCAAGCGCGGTATTGCCGTGGACAGAAG
CCCTAAAGGATGGCAGGACG

Downstream 100 bases:

>100_bases
TGGATCAGGTTCTGATTGTGGCGGCGGAAGCCTCCAGTGTGACCTATGCCCAAAGAATTCTGGAAGCCTGGAAGGCCCAG
GGCCGCAAAGTCCATGCTTT

Product: oxidoreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSKKLRGAVVGVGYLGKFHAQKYKNNPNVELVGVCDHFPAQADKIAMELGVKSFHKPQDLIGHVDLVTIAASTLSHFELA
KMFVENGVHVNVEKPITATVPQAEELLALAAKKNVKVAVGHIERFNPAINDLQKHLKNPKFIELNRMAPYNKRGSDVSVL
HDLMIHDMDLLFWLTGSEIESMTGTGTKLISKELDTASVSFKMKNGMQVMINVSRVSPVAQRSIRVLQDDCTLWAQTGTL
ELEKVVPGPGGDEFLTVTKWSVEKADALQRETDAFIDCVLNDKQPVVTGLDGLKALKAIEDVQRMIEG

Sequences:

>Translated_308_residues
MSKKLRGAVVGVGYLGKFHAQKYKNNPNVELVGVCDHFPAQADKIAMELGVKSFHKPQDLIGHVDLVTIAASTLSHFELA
KMFVENGVHVNVEKPITATVPQAEELLALAAKKNVKVAVGHIERFNPAINDLQKHLKNPKFIELNRMAPYNKRGSDVSVL
HDLMIHDMDLLFWLTGSEIESMTGTGTKLISKELDTASVSFKMKNGMQVMINVSRVSPVAQRSIRVLQDDCTLWAQTGTL
ELEKVVPGPGGDEFLTVTKWSVEKADALQRETDAFIDCVLNDKQPVVTGLDGLKALKAIEDVQRMIEG
>Mature_307_residues
SKKLRGAVVGVGYLGKFHAQKYKNNPNVELVGVCDHFPAQADKIAMELGVKSFHKPQDLIGHVDLVTIAASTLSHFELAK
MFVENGVHVNVEKPITATVPQAEELLALAAKKNVKVAVGHIERFNPAINDLQKHLKNPKFIELNRMAPYNKRGSDVSVLH
DLMIHDMDLLFWLTGSEIESMTGTGTKLISKELDTASVSFKMKNGMQVMINVSRVSPVAQRSIRVLQDDCTLWAQTGTLE
LEKVVPGPGGDEFLTVTKWSVEKADALQRETDAFIDCVLNDKQPVVTGLDGLKALKAIEDVQRMIEG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787307, Length=317, Percent_Identity=24.6056782334385, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787574, Length=141, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081947, Length=129, Percent_Identity=34.8837209302326, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: NA

Molecular weight: Translated: 33921; Mature: 33790

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKLRGAVVGVGYLGKFHAQKYKNNPNVELVGVCDHFPAQADKIAMELGVKSFHKPQDL
CCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCHHHCCCHHHH
IGHVDLVTIAASTLSHFELAKMFVENGVHVNVEKPITATVPQAEELLALAAKKNVKVAVG
HCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHHHCCCCEEEEC
HIERFNPAINDLQKHLKNPKFIELNRMAPYNKRGSDVSVLHDLMIHDMDLLFWLTGSEIE
CHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHH
SMTGTGTKLISKELDTASVSFKMKNGMQVMINVSRVSPVAQRSIRVLQDDCTLWAQTGTL
HCCCCCHHHHHHCCCCCEEEEEECCCEEEEEEEHHCCHHHHHHHHHHHCCCEEEEECCCE
ELEKVVPGPGGDEFLTVTKWSVEKADALQRETDAFIDCVLNDKQPVVTGLDGLKALKAIE
EEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHEEEEECCCCCEEECHHHHHHHHHHH
DVQRMIEG
HHHHHHCC
>Mature Secondary Structure 
SKKLRGAVVGVGYLGKFHAQKYKNNPNVELVGVCDHFPAQADKIAMELGVKSFHKPQDL
CCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCHHHCCCHHHH
IGHVDLVTIAASTLSHFELAKMFVENGVHVNVEKPITATVPQAEELLALAAKKNVKVAVG
HCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCHHHHHHHHHCCCCEEEEC
HIERFNPAINDLQKHLKNPKFIELNRMAPYNKRGSDVSVLHDLMIHDMDLLFWLTGSEIE
CHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCHHH
SMTGTGTKLISKELDTASVSFKMKNGMQVMINVSRVSPVAQRSIRVLQDDCTLWAQTGTL
HCCCCCHHHHHHCCCCCEEEEEECCCEEEEEEEHHCCHHHHHHHHHHHCCCEEEEECCCE
ELEKVVPGPGGDEFLTVTKWSVEKADALQRETDAFIDCVLNDKQPVVTGLDGLKALKAIE
EEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHEEEEECCCCCEEECHHHHHHHHHHH
DVQRMIEG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]